A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
V7 ENSSSCG00000000936 5:92051099-92076522    
V7 ENSSSCG00000006734 4:107816226-107847307   CU468873,CH242-284J24,4:107815328-107859077
(Clone quality: bE284J24 on chr=4; Num_of_Contigs=15; )
VAC14   ENSSSCG00000002729 6:10058362-10080791   CU638837,CH242-1N3,6:9881584-10081629
(Clone quality: bE1N3 on chr=6; Num_of_Contigs=2; )
VAMP1   ENSSSCG00000000703 5:60200176-60204632   CU633552,CH242-193I18,5:60186767-60298754
(Clone quality: bE193I18 on chr=5; Num_of_Contigs=2; )
VAMP2   ENSSSCG00000017984 12:50606157-50608091   CU914306,CH242-98O15,12:50562814-50608727
(Clone quality: bE98O15 on chr=12; Num_of_Contigs=9; )
VAMP4   ENSSSCG00000015482 9:107133023-107165701   CU928019,CH242-102L6,9:107032719-107220326
(Clone quality: bE102L6 on chr=9; Num_of_Contigs=1; )
VAMP5   ENSSSCG00000008231 3:54044733-54045914   CU928286,CH242-219K12,3:54043219-54085564
(Clone quality: bE219K12 on chr=3; Num_of_Contigs=4; )
VANGL1   ENSSSCG00000006746 4:109313161-109352730    
VANGL2   ENSSSCG00000006383 4:93503022-93510679   CU179691,CH242-251N5,4:93490988-93516813
(Clone quality: bE251N5 on chr=4; Num_of_Contigs=5; )
VAPA location ⇒ 17:61253124-61253192 CR956404,PigE-75D22,17:61204464-61265205
(No clone quality info on bT75D22) 		 
VAPB   ENSSSCG00000007514 17:61197833-61262777    
VARS ENSSSCG00000001384 7:27361729-27373768 CT971577,CH242-239H1,7:27216113-27394697
(Clone quality: bE239H1 on chr=7; Num_of_Contigs=1; ) 		 
VARS2   ENSSSCG00000001384 7:27361729-27373768 CT971577,CH242-239H1,7:27216113-27394697
(Clone quality: bE239H1 on chr=7; Num_of_Contigs=1; ) 		 
VARSL location ⇒ 7:27362337-27362537 CT971577,CH242-239H1,7:27216113-27394697
(Clone quality: bE239H1 on chr=7; Num_of_Contigs=1; ) 		 
VARSL location ⇒ 7:27370229-27370384 CT971577,CH242-239H1,7:27216113-27394697
(Clone quality: bE239H1 on chr=7; Num_of_Contigs=1; ) 		 
VARSL location ⇒ 7:27371647-27371855 CT971577,CH242-239H1,7:27216113-27394697
(Clone quality: bE239H1 on chr=7; Num_of_Contigs=1; ) 		 
VARSL location ⇒ 7:27372827-27373005 CT971577,CH242-239H1,7:27216113-27394697
(Clone quality: bE239H1 on chr=7; Num_of_Contigs=1; ) 		 
VASH1   ENSSSCG00000002389 7:107923069-107936536    
VASH2   ENSSSCG00000015589 9:122947611-122982366   CU928431,CH242-12J10,9:122912528-122996434
(Clone quality: bE12J10 on chr=9; Num_of_Contigs=5; )
VASP ENSSSCG00000016461 18:5778897-5867906    
VASP ENSSSCG00000002513 7:130257886-130314992    
VAT1 ENSSSCG00000009601 14:3964476-3991654   CU468169,CH242-117E9,14:3935323-4002125
(Clone quality: bE117E9 on chr=14; Num_of_Contigs=3; )
VAT1 location ⇒ 14:87688137-87688268   CU694245,CH242-440K10,14:87663357-87802824
(Clone quality: bE440K10 on chr=14; Num_of_Contigs=1; )
VAT1 location ⇒ 14:87688391-87688451   CU694245,CH242-440K10,14:87663357-87802824
(Clone quality: bE440K10 on chr=14; Num_of_Contigs=1; )
VAT1L   ENSSSCG00000002696 6:7134032-7218551    
Vault   ENSSSCG00000018796 X:24071806-24071894 FP102153,CH242-292J8,X:23974963-24151552
(Clone quality: bE292J8 on chr=X; Num_of_Contigs=1; ) 		 
VAV1 ENSSSCG00000013553 2:50182194-50211641   CU681822,CH242-171H11,2:50148903-50216237
(Clone quality: bE171H11 on chr=2; Num_of_Contigs=13; )
VAV1 location ⇒ 2:50209401-50209557   CU681822,CH242-171H11,2:50148903-50216237
(Clone quality: bE171H11 on chr=2; Num_of_Contigs=13; )
VAV1 location ⇒ 2:50211327-50211636   CU681822,CH242-171H11,2:50148903-50216237
(Clone quality: bE171H11 on chr=2; Num_of_Contigs=13; )
VAV1 location ⇒ 2:50277175-50276960   CU856214,CH242-17I12,2:50262831-50301105
(Clone quality: bE17I12 on chr=2; Num_of_Contigs=13; )
VAV1 location ⇒ 2:50341115-50341424   CU856214,CH242-17I12,2:50305424-50371532
(Clone quality: bE17I12 on chr=2; Num_of_Contigs=13; )
VAV2 ENSSSCG00000005743 1:288555013-288597646    
VAV2 location ⇒ 1:288555114-288555012   CU572088,CH242-222B5,1:288550409-288573978
(Clone quality: bE222B5 on chr=1; Num_of_Contigs=9; )
VAV2 location ⇒ 1:288560843-288560597   CU572088,CH242-222B5,1:288550409-288573978
(Clone quality: bE222B5 on chr=1; Num_of_Contigs=9; )
VAV2 location ⇒ 1:289146581-289146529   CU627992,CH242-201C5,1:289145697-289150081
(Clone quality: bE201C5 on chr=1; Num_of_Contigs=12; )
VAV2 location ⇒ 1:289255586-289255832   CU627992,CH242-201C5,1:289252716-289258180
(Clone quality: bE201C5 on chr=1; Num_of_Contigs=12; )
VAV3 ENSSSCG00000006851 4:116439246-116809019    
VAV3 location ⇒ 4:116893717-116893871   CU138565,CH242-232L2,4:116883721-116928920
(Clone quality: bE232L2 on chr=4; Num_of_Contigs=13; )
VAV3 location ⇒ 4:116894728-116895715   CU138565,CH242-232L2,4:116883721-116928920
(Clone quality: bE232L2 on chr=4; Num_of_Contigs=13; )
VAV3 location ⇒ 4:116944265-116943281   CU407227,CH242-384O10,4:116933059-116946376
(Clone quality: bE384O10 on chr=4; Num_of_Contigs=14; )
VAV3 location ⇒ 4:116945288-116945134   CU407227,CH242-384O10,4:116933059-116946376
(Clone quality: bE384O10 on chr=4; Num_of_Contigs=14; )
VAX1   ENSSSCG00000010666 14:133133178-133137157   CU468444,CH242-75D17,14:133112192-133143808
(Clone quality: bE75D17 on chr=14; Num_of_Contigs=6; )
VBP1   ENSSSCG00000012811 X:123413161-123434110 CU861979,CH242-305A15,X:123389549-123544360
(Clone quality: bE305A15 on chr=X; Num_of_Contigs=11; ) 		 
VCA-2 ENSSSCG00000017578 12:24655910-24790905    
VCAM1 ENSSSCG00000006862 4:122369849-122384181   CU467566,CH242-347G20,4:122358778-122411545
(Clone quality: bE347G20 on chr=4; Num_of_Contigs=10; )
VCAM1 location ⇒ 4:122370179-122369861   CU467566,CH242-347G20,4:122358778-122411545
(Clone quality: bE347G20 on chr=4; Num_of_Contigs=10; )
VCAM1 location ⇒ 4:122370794-122370245   CU467566,CH242-347G20,4:122358778-122411545
(Clone quality: bE347G20 on chr=4; Num_of_Contigs=10; )
VCAM1 location ⇒ 4:122381157-122380846   CU467566,CH242-347G20,4:122358778-122411545
(Clone quality: bE347G20 on chr=4; Num_of_Contigs=10; )
VCAM1 location ⇒ 4:122383457-122383179   CU467566,CH242-347G20,4:122358778-122411545
(Clone quality: bE347G20 on chr=4; Num_of_Contigs=10; )
Go to records:
1-49, 50-100, 101-150, 151-200, 201-24

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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