A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
HLA-J ENSSSCG00000001228 7:24434481-24435039   FP085552,CH242-74M17,7:24423533-24504970
(Clone quality: bE74M17 on chr=7; Num_of_Contigs=9; )
HLCS   ENSSSCG00000012059 13:140843440-140882498   CU861931,CH242-165C23,13:140790363-140890145
(Clone quality: bE165C23 on chr=13; Num_of_Contigs=3; )
HLF location ⇒ 12:29172870-29172532   CU914401,CH242-132M18,12:29167985-29185833
(Clone quality: bE132M18 on chr=12; Num_of_Contigs=8; )
HLF location ⇒ 12:29326378-29324300   CU914401,CH242-132M18,12:29307684-29339251
(Clone quality: bE132M18 on chr=12; Num_of_Contigs=8; )
HLF location ⇒ 12:29326577-29326522   CU914401,CH242-132M18,12:29307684-29339251
(Clone quality: bE132M18 on chr=12; Num_of_Contigs=8; )
HLF location ⇒ 12:29331961-29331737   CU914401,CH242-132M18,12:29307684-29339251
(Clone quality: bE132M18 on chr=12; Num_of_Contigs=8; )
HLTF   ENSSSCG00000011696 13:72552028-72565359    
HLX   ENSSSCG00000010830 10:10287550-10290130   CU855622,CH242-455N3,10:10287068-10293892
(Clone quality: bE455N3 on chr=10; Num_of_Contigs=22; )
HLX1 ENSSSCG00000010830 10:10287550-10290130   CU855622,CH242-455N3,10:10287068-10293892
(Clone quality: bE455N3 on chr=10; Num_of_Contigs=22; )
HLXB9 ENSSSCG00000016410 18:836518-841444   CU928638,CH242-402N9,18:819646-860056
(Clone quality: bE402N9 on chr=18; Num_of_Contigs=6; )
HLXB9 location ⇒ 14:139130635-139130839   CU468341,CH242-268H7,14:139020351-139163532
(Clone quality: bE268H7 on chr=14; Num_of_Contigs=2; )
HLXB9 location ⇒ 14:139142640-139143095   CU468341,CH242-268H7,14:139020351-139163532
(Clone quality: bE268H7 on chr=14; Num_of_Contigs=2; )
HM13 ENSSSCG00000007228 17:37278217-37299645    
HM13 location ⇒ 17:37286525-37286648   CU407217,CH242-373G11,17:37276704-37287207
(Clone quality: bE373G11 on chr=17; Num_of_Contigs=23; )
HM13 location ⇒ 17:37294928-37295032   CU407217,CH242-373G11,17:37287308-37296126
(Clone quality: bE373G11 on chr=17; Num_of_Contigs=23; )
HM13 location ⇒ 17:37299245-37299391   CU407217,CH242-373G11,17:37296227-37305728
(Clone quality: bE373G11 on chr=17; Num_of_Contigs=23; )
HM13 location ⇒ 17:5709389-5709519   CU469367,CH242-177G4,17:5708862-5712956
(Clone quality: bE177G4 on chr=17; Num_of_Contigs=30; )
HMBOX1   ENSSSCG00000009682 14:12770949-12962024    
HMBS ENSSSCG00000015108 9:44878915-44887550   CU695209,CH242-241K21,9:44878152-44887937
(Clone quality: bE241K21 on chr=9; Num_of_Contigs=5; )
HMBS location ⇒ 9:44878959-44879099   CU695209,CH242-241K21,9:44878152-44887937
(Clone quality: bE241K21 on chr=9; Num_of_Contigs=5; )
HMBS location ⇒ 9:44886952-44887369   CU695209,CH242-241K21,9:44878152-44887937
(Clone quality: bE241K21 on chr=9; Num_of_Contigs=5; )
HMBS location ⇒ 9:44912444-44912584   CU639481,CH242-263G17,9:44899832-45096295
(Clone quality: bE263G17 on chr=9; Num_of_Contigs=2; )
HMBS location ⇒ 9:44920437-44920854   CU639481,CH242-263G17,9:44899832-45096295
(Clone quality: bE263G17 on chr=9; Num_of_Contigs=2; )
HMCN1 ENSSSCG00000015575 9:119838171-119845493   CU928941,CH242-1F11,9:119835625-119849086
(Clone quality: bE1F11 on chr=9; Num_of_Contigs=8; )
HMCN2 ENSSSCG00000005699 1:285428074-285549873    
HMG1 location ⇒ 11:6633450-6631929 CU062617,CH242-96H3,11:6615101-6637356
(Clone quality: bE96H3 on chr=11; Num_of_Contigs=1; ) 		 
HMG1 location ⇒ 11:6634874-6634699 CU062617,CH242-96H3,11:6615101-6637356
(Clone quality: bE96H3 on chr=11; Num_of_Contigs=1; ) 		 
HMG1 location ⇒ 11:6635515-6635368 CU062617,CH242-96H3,11:6615101-6637356
(Clone quality: bE96H3 on chr=11; Num_of_Contigs=1; ) 		 
HMG1 location ⇒ 11:6635881-6635724 CU062617,CH242-96H3,11:6615101-6637356
(Clone quality: bE96H3 on chr=11; Num_of_Contigs=1; ) 		 
HMG20A   ENSSSCG00000001871 7:62747561-62773842   CT954219,CH242-524G5,7:62745330-62811631
(Clone quality: bE524G5 on chr=7; Num_of_Contigs=3; )
HMG20B   ENSSSCG00000013484 2:48126667-48132124   CU915719,CH242-157K19,2:48050805-48153822
(Clone quality: bE157K19 on chr=2; Num_of_Contigs=5; )
HMGA1   ENSSSCG00000001526 7:34782991-34792680    
HMGB1 ENSSSCG00000009327 11:6631904-6638030    
HMGB1L1   ENSSSCG00000009327 11:6631904-6638030    
HMGB2   ENSSSCG00000009704 14:16305098-16306865   CT827844,CH242-252N8,14:16304166-16433033
(Clone quality: bE252N8 on chr=14; Num_of_Contigs=4; )
HMGCLL1   ENSSSCG00000001479 7:30035699-30056407   CU550667,CH242-243P19,7:30016839-30073102
(Clone quality: bE243P19 on chr=7; Num_of_Contigs=2; )
HMGCR   ENSSSCG00000014080 2:73236691-73258160   CU694556,CH242-177D18,2:73227715-73368035
(Clone quality: bE177D18 on chr=2; Num_of_Contigs=2; )
HMGCS1 ENSSSCG00000016872 16:25136193-25154589    
HMGCS1 location ⇒ 16:25146247-25146707   CU655897,CH242-147C10,16:25113235-25152196
(Clone quality: bE147C10 on chr=16; Num_of_Contigs=7; )
HMGCS1 location ⇒ 16:25147848-25148014   CU655897,CH242-147C10,16:25113235-25152196
(Clone quality: bE147C10 on chr=16; Num_of_Contigs=7; )
HMGCS1 location ⇒ 16:25150390-25150564   CU655897,CH242-147C10,16:25113235-25152196
(Clone quality: bE147C10 on chr=16; Num_of_Contigs=7; )
HMGCS1 location ⇒ 16:25153863-25155237   CU655897,CH242-147C10,16:25152297-25185315
(Clone quality: bE147C10 on chr=16; Num_of_Contigs=7; )
HMGCS2   ENSSSCG00000006716 4:105616696-105636192 CR956647,CH242-38B5,4:105599155-105730207
(No clone quality info on bE38B5) 		 
HMGN3   ENSSSCG00000004470 1:91844234-91847249   CU074282,CH242-124C3,1:91840945-91977429
(Clone quality: bE124C3 on chr=1; Num_of_Contigs=2; )
HMGN4   ENSSSCG00000003555 6:57483667-57487191    
HMGXB3   ENSSSCG00000014440 2:136477849-136525536    
HMMR ENSSSCG00000017022 16:57785304-57826403    
HMOX1 location ⇒ 3:33859937-33859863   CU928821,CH242-271C18,3:33828913-33892865
(Clone quality: bE271C18 on chr=3; Num_of_Contigs=7; )
HMOX2   ENSSSCG00000007942 3:33857990-33885731   CU928821,CH242-271C18,3:33828913-33892865
(Clone quality: bE271C18 on chr=3; Num_of_Contigs=7; )
HMX1   ENSSSCG00000008720 8:3312327-3737453    
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-32

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Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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