Pig genome annotation: A Gene Wish List

A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )

User Gene List	Genome Location (Chr.:start-end)	Fell within Finished BACs (Contig, BACname, Chr.:Start-End)	Fell within Unfinished Clones (SeqName, Chr.:Start-End)
Symbol	Owner/ Status	Ensembl Gene ID

HIST1H2BC		ENSSSCG00000001129	7:22010894-22011274		CU466447,CH242-214G3,7:22003876-22069073 (Clone quality: bE214G3 on chr=7; Num_of_Contigs=15; )
HIST1H2BF		ENSSSCG00000001126	7:22001585-22001965		CU466447,CH242-214G3,7:21994532-22003775 (Clone quality: bE214G3 on chr=7; Num_of_Contigs=15; )
HIST1H2BH		ENSSSCG00000001165	7:22859325-22859705		CU041316,CH242-47D17,7:22710800-22886089 (Clone quality: bE47D17 on chr=7; Num_of_Contigs=1; )
HIST1H2BK		ENSSSCG00000001175	7:22897564-22897944		CU407097,CH242-5B5,7:22886090-22899889 (Clone quality: bE5B5 on chr=7; Num_of_Contigs=4; )
HIST1H2BO		location ⇒	7:22010915-22011272		CU466447,CH242-214G3,7:22003876-22069073 (Clone quality: bE214G3 on chr=7; Num_of_Contigs=15; )
HIST1H2BO		location ⇒	7:22859706-22859327		CU041316,CH242-47D17,7:22710800-22886089 (Clone quality: bE47D17 on chr=7; Num_of_Contigs=1; )
HIST1H2BO		location ⇒	7:22870951-22871333		CU041316,CH242-47D17,7:22710800-22886089 (Clone quality: bE47D17 on chr=7; Num_of_Contigs=1; )
HIST1H2BO		location ⇒	7:22884133-22884494		CU041316,CH242-47D17,7:22710800-22886089 (Clone quality: bE47D17 on chr=7; Num_of_Contigs=1; )
HIST1H3E		ENSSSCG00000001127	7:22008598-22009008		CU466447,CH242-214G3,7:22003876-22069073 (Clone quality: bE214G3 on chr=7; Num_of_Contigs=15; )
HIST1H3F		ENSSSCG00000001125	7:22000136-22000546		CU466447,CH242-214G3,7:21994532-22003775 (Clone quality: bE214G3 on chr=7; Num_of_Contigs=15; )
HIST1H3G		ENSSSCG00000001112	7:21908327-21908737		CT797471,CH242-54M14,7:21795511-21989531 (Clone quality: bE54M14 on chr=7; Num_of_Contigs=1; )
HIST1H3I		ENSSSCG00000001136	7:22105699-22106106		CU466447,CH242-214G3,7:22100986-22108404 (Clone quality: bE214G3 on chr=7; Num_of_Contigs=15; )
HIST1H3J		ENSSSCG00000001178	7:22910125-22910532		CU407097,CH242-5B5,7:22905191-22930540 (Clone quality: bE5B5 on chr=7; Num_of_Contigs=4; )
HIST1H4D		ENSSSCG00000001130	7:22015001-22015312		CU466447,CH242-214G3,7:22003876-22069073 (Clone quality: bE214G3 on chr=7; Num_of_Contigs=15; )
HIST1H4F		ENSSSCG00000001121	7:21961687-21961995		CT797471,CH242-54M14,7:21795511-21989531 (Clone quality: bE54M14 on chr=7; Num_of_Contigs=1; )
HIST1H4I		ENSSSCG00000001141	7:22160853-22161161		CU466447,CH242-214G3,7:22148871-22164293 (Clone quality: bE214G3 on chr=7; Num_of_Contigs=15; )
HIST1H4L		ENSSSCG00000001171	7:22873133-22873444		CU041316,CH242-47D17,7:22710800-22886089 (Clone quality: bE47D17 on chr=7; Num_of_Contigs=1; )
HIST2H2AA4		ENSSSCG00000006672	4:103200109-103200501		CU462833,CH242-167L20,4:103179974-103208836 (Clone quality: bE167L20 on chr=4; Num_of_Contigs=2; )
HIST2H2AB		ENSSSCG00000006668	4:103179354-103179746		CU468464,CH242-21F2,4:103158804-103179973 (Clone quality: bE21F2 on chr=4; Num_of_Contigs=8; )
HIST2H2AC		ENSSSCG00000006669	4:103180061-103180450		CU462833,CH242-167L20,4:103179974-103208836 (Clone quality: bE167L20 on chr=4; Num_of_Contigs=2; )
HIST2H2BE		ENSSSCG00000006670	4:103180776-103181156		CU462833,CH242-167L20,4:103179974-103208836 (Clone quality: bE167L20 on chr=4; Num_of_Contigs=2; )
HIST2H2BF		ENSSSCG00000006677	4:103227145-103227525		CU462833,CH242-167L20,4:103208937-103337851 (Clone quality: bE167L20 on chr=4; Num_of_Contigs=2; )
HIST2H3C		ENSSSCG00000006676	4:103225707-103226114		CU462833,CH242-167L20,4:103208937-103337851 (Clone quality: bE167L20 on chr=4; Num_of_Contigs=2; )
HIST2H3PS2		ENSSSCG00000006671	4:103198512-103198919		CU462833,CH242-167L20,4:103179974-103208836 (Clone quality: bE167L20 on chr=4; Num_of_Contigs=2; )
HIST3H2A		ENSSSCG00000013999	2:66971832-66972224	FP015983,CH242-74L12,2:66907442-67096474 (Clone quality: bE74L12 on chr=2; Num_of_Contigs=3; )
HIST3H2BB		ENSSSCG00000013998	2:66971115-66971495	FP015983,CH242-74L12,2:66907442-67096474 (Clone quality: bE74L12 on chr=2; Num_of_Contigs=3; )
HIST3H3		ENSSSCG00000001167	7:22862488-22862898		CU041316,CH242-47D17,7:22710800-22886089 (Clone quality: bE47D17 on chr=7; Num_of_Contigs=1; )
HIVEP1		ENSSSCG00000001049	7:8873935-8914506		CU468890,CH242-25F15,7:8802508-8987320 (Clone quality: bE25F15 on chr=7; Num_of_Contigs=1; )
HIVEP1		location ⇒	7:8767637-8767735	CT797480,CH242-209J20,7:8631402-8793626 (Clone quality: bE209J20 on chr=7; Num_of_Contigs=4; )
HIVEP1		location ⇒	7:8767789-8767852	CT797480,CH242-209J20,7:8631402-8793626 (Clone quality: bE209J20 on chr=7; Num_of_Contigs=4; )
HIVEP1		location ⇒	7:8914551-8914754		CU468890,CH242-25F15,7:8802508-8987320 (Clone quality: bE25F15 on chr=7; Num_of_Contigs=1; )
HIVEP1		location ⇒	7:8914787-8915047		CU468890,CH242-25F15,7:8802508-8987320 (Clone quality: bE25F15 on chr=7; Num_of_Contigs=1; )
HIVEP2		ENSSSCG00000004138	1:23573639-23595763		CU856384,CH242-143E19,1:23530436-23603756 (Clone quality: bE143E19 on chr=1; Num_of_Contigs=8; )
HIVEP2		location ⇒	1:23573246-23578215		CU856384,CH242-143E19,1:23530436-23603756 (Clone quality: bE143E19 on chr=1; Num_of_Contigs=8; )
HIVEP2		location ⇒	1:23588605-23588686		CU856384,CH242-143E19,1:23530436-23603756 (Clone quality: bE143E19 on chr=1; Num_of_Contigs=8; )
HIVEP2		location ⇒	1:23588738-23589494		CU856384,CH242-143E19,1:23530436-23603756 (Clone quality: bE143E19 on chr=1; Num_of_Contigs=8; )
HIVEP2		location ⇒	1:23594939-23597401		CU856384,CH242-143E19,1:23530436-23603756 (Clone quality: bE143E19 on chr=1; Num_of_Contigs=8; )
HJURP		ENSSSCG00000016313	15:126890482-126907060		CU856250,CH242-89G11,15:126848723-126914865 (Clone quality: bE89G11 on chr=15; Num_of_Contigs=6; )
HK1		ENSSSCG00000010253	14:75486549-75607136
HK2		ENSSSCG00000008261	3:62545454-62621130
HK3		ENSSSCG00000014048	2:70044379-70062364		CU469199,CH242-222J24,2:70023175-70114180 (Clone quality: bE222J24 on chr=2; Num_of_Contigs=4; )
HKDC1		ENSSSCG00000010252	14:75434265-75483470		CT737222,CH242-62M1,14:75343233-75510707 (Clone quality: bE62M1 on chr=14; Num_of_Contigs=1; )
HLA-B		ENSSSCG00000005715	1:286805591-286809925
HLA-B		ENSSSCG00000001410	7:27715820-27728074	CU467793,CH242-60C3,7:27581747-27762222 (Clone quality: bE60C3 on chr=7; Num_of_Contigs=1; )
HLA-B		ENSSSCG00000001400	7:27616916-27627904	CU467793,CH242-60C3,7:27581747-27762222 (Clone quality: bE60C3 on chr=7; Num_of_Contigs=1; )
HLA-B		ENSSSCG00000001409	7:27701255-27714990	CU467793,CH242-60C3,7:27581747-27762222 (Clone quality: bE60C3 on chr=7; Num_of_Contigs=1; )
HLA-DMA		ENSSSCG00000001470	7:29509208-29513680	CU618315,CH242-254M4,7:29473579-29573903 (Clone quality: bE254M4 on chr=7; Num_of_Contigs=1; )
HLA-DMB		ENSSSCG00000001469	7:29494987-29500822	CU618315,CH242-254M4,7:29473579-29573903 (Clone quality: bE254M4 on chr=7; Num_of_Contigs=1; )
HLA-DOA		ENSSSCG00000001472	7:29555426-29558418	CU618315,CH242-254M4,7:29473579-29573903 (Clone quality: bE254M4 on chr=7; Num_of_Contigs=1; )
HLA-DRA		ENSSSCG00000001453	7:29095605-29101239	CU468849,CH242-213K14,7:29079506-29272939 (Clone quality: bE213K14 on chr=7; Num_of_Contigs=6; )

User Gene List

Genome Location

(Chr.:start-end)

Fell within Finished BACs

(Contig, BACname, Chr.:Start-End)

Fell within Unfinished Clones

(SeqName, Chr.:Start-End)

Symbol

Owner/ Status

Ensembl Gene ID

HIST1H2BC

ENSSSCG00000001129

7:22010894-22011274

CU466447,CH242-214G3,7:22003876-22069073
(Clone quality: bE214G3 on chr=7; Num_of_Contigs=15; )

HIST1H2BF

ENSSSCG00000001126

7:22001585-22001965

CU466447,CH242-214G3,7:21994532-22003775
(Clone quality: bE214G3 on chr=7; Num_of_Contigs=15; )

HIST1H2BH

ENSSSCG00000001165

7:22859325-22859705

CU041316,CH242-47D17,7:22710800-22886089
(Clone quality: bE47D17 on chr=7; Num_of_Contigs=1; )

HIST1H2BK

ENSSSCG00000001175

7:22897564-22897944

CU407097,CH242-5B5,7:22886090-22899889
(Clone quality: bE5B5 on chr=7; Num_of_Contigs=4; )

HIST1H2BO

location ⇒

7:22010915-22011272

CU466447,CH242-214G3,7:22003876-22069073
(Clone quality: bE214G3 on chr=7; Num_of_Contigs=15; )

HIST1H2BO

location ⇒

7:22859706-22859327

CU041316,CH242-47D17,7:22710800-22886089
(Clone quality: bE47D17 on chr=7; Num_of_Contigs=1; )

HIST1H2BO

location ⇒

7:22870951-22871333

CU041316,CH242-47D17,7:22710800-22886089
(Clone quality: bE47D17 on chr=7; Num_of_Contigs=1; )

HIST1H2BO

location ⇒

7:22884133-22884494

CU041316,CH242-47D17,7:22710800-22886089
(Clone quality: bE47D17 on chr=7; Num_of_Contigs=1; )

HIST1H3E

ENSSSCG00000001127

7:22008598-22009008

CU466447,CH242-214G3,7:22003876-22069073
(Clone quality: bE214G3 on chr=7; Num_of_Contigs=15; )

HIST1H3F

ENSSSCG00000001125

7:22000136-22000546

CU466447,CH242-214G3,7:21994532-22003775
(Clone quality: bE214G3 on chr=7; Num_of_Contigs=15; )

HIST1H3G

ENSSSCG00000001112

7:21908327-21908737

CT797471,CH242-54M14,7:21795511-21989531
(Clone quality: bE54M14 on chr=7; Num_of_Contigs=1; )

HIST1H3I

ENSSSCG00000001136

7:22105699-22106106

CU466447,CH242-214G3,7:22100986-22108404
(Clone quality: bE214G3 on chr=7; Num_of_Contigs=15; )

HIST1H3J

ENSSSCG00000001178

7:22910125-22910532

CU407097,CH242-5B5,7:22905191-22930540
(Clone quality: bE5B5 on chr=7; Num_of_Contigs=4; )

HIST1H4D

ENSSSCG00000001130

7:22015001-22015312

CU466447,CH242-214G3,7:22003876-22069073
(Clone quality: bE214G3 on chr=7; Num_of_Contigs=15; )

HIST1H4F

ENSSSCG00000001121

7:21961687-21961995

CT797471,CH242-54M14,7:21795511-21989531
(Clone quality: bE54M14 on chr=7; Num_of_Contigs=1; )

HIST1H4I

ENSSSCG00000001141

7:22160853-22161161

CU466447,CH242-214G3,7:22148871-22164293
(Clone quality: bE214G3 on chr=7; Num_of_Contigs=15; )

HIST1H4L

ENSSSCG00000001171

7:22873133-22873444

CU041316,CH242-47D17,7:22710800-22886089
(Clone quality: bE47D17 on chr=7; Num_of_Contigs=1; )

HIST2H2AA4

ENSSSCG00000006672

4:103200109-103200501

CU462833,CH242-167L20,4:103179974-103208836
(Clone quality: bE167L20 on chr=4; Num_of_Contigs=2; )

HIST2H2AB

ENSSSCG00000006668

4:103179354-103179746

CU468464,CH242-21F2,4:103158804-103179973
(Clone quality: bE21F2 on chr=4; Num_of_Contigs=8; )

HIST2H2AC

ENSSSCG00000006669

4:103180061-103180450

CU462833,CH242-167L20,4:103179974-103208836
(Clone quality: bE167L20 on chr=4; Num_of_Contigs=2; )

HIST2H2BE

ENSSSCG00000006670

4:103180776-103181156

CU462833,CH242-167L20,4:103179974-103208836
(Clone quality: bE167L20 on chr=4; Num_of_Contigs=2; )

HIST2H2BF

ENSSSCG00000006677

4:103227145-103227525

CU462833,CH242-167L20,4:103208937-103337851
(Clone quality: bE167L20 on chr=4; Num_of_Contigs=2; )

HIST2H3C

ENSSSCG00000006676

4:103225707-103226114

CU462833,CH242-167L20,4:103208937-103337851
(Clone quality: bE167L20 on chr=4; Num_of_Contigs=2; )

HIST2H3PS2

ENSSSCG00000006671

4:103198512-103198919

CU462833,CH242-167L20,4:103179974-103208836
(Clone quality: bE167L20 on chr=4; Num_of_Contigs=2; )

HIST3H2A

ENSSSCG00000013999

2:66971832-66972224

FP015983,CH242-74L12,2:66907442-67096474
(Clone quality: bE74L12 on chr=2; Num_of_Contigs=3; )

HIST3H2BB

ENSSSCG00000013998

2:66971115-66971495

FP015983,CH242-74L12,2:66907442-67096474
(Clone quality: bE74L12 on chr=2; Num_of_Contigs=3; )

HIST3H3

ENSSSCG00000001167

7:22862488-22862898

CU041316,CH242-47D17,7:22710800-22886089
(Clone quality: bE47D17 on chr=7; Num_of_Contigs=1; )

HIVEP1

ENSSSCG00000001049

7:8873935-8914506

CU468890,CH242-25F15,7:8802508-8987320
(Clone quality: bE25F15 on chr=7; Num_of_Contigs=1; )

HIVEP1

location ⇒

7:8767637-8767735

CT797480,CH242-209J20,7:8631402-8793626
(Clone quality: bE209J20 on chr=7; Num_of_Contigs=4; )

HIVEP1

location ⇒

7:8767789-8767852

CT797480,CH242-209J20,7:8631402-8793626
(Clone quality: bE209J20 on chr=7; Num_of_Contigs=4; )

HIVEP1

location ⇒

7:8914551-8914754

CU468890,CH242-25F15,7:8802508-8987320
(Clone quality: bE25F15 on chr=7; Num_of_Contigs=1; )

HIVEP1

location ⇒

7:8914787-8915047

CU468890,CH242-25F15,7:8802508-8987320
(Clone quality: bE25F15 on chr=7; Num_of_Contigs=1; )

HIVEP2

ENSSSCG00000004138

1:23573639-23595763

CU856384,CH242-143E19,1:23530436-23603756
(Clone quality: bE143E19 on chr=1; Num_of_Contigs=8; )

HIVEP2

location ⇒

1:23573246-23578215

CU856384,CH242-143E19,1:23530436-23603756
(Clone quality: bE143E19 on chr=1; Num_of_Contigs=8; )

HIVEP2

location ⇒

1:23588605-23588686

CU856384,CH242-143E19,1:23530436-23603756
(Clone quality: bE143E19 on chr=1; Num_of_Contigs=8; )

HIVEP2

location ⇒

1:23588738-23589494

CU856384,CH242-143E19,1:23530436-23603756
(Clone quality: bE143E19 on chr=1; Num_of_Contigs=8; )

HIVEP2

location ⇒

1:23594939-23597401

CU856384,CH242-143E19,1:23530436-23603756
(Clone quality: bE143E19 on chr=1; Num_of_Contigs=8; )

HJURP

ENSSSCG00000016313

15:126890482-126907060

CU856250,CH242-89G11,15:126848723-126914865
(Clone quality: bE89G11 on chr=15; Num_of_Contigs=6; )

HK1

ENSSSCG00000010253

14:75486549-75607136

HK2

ENSSSCG00000008261

3:62545454-62621130

HK3

ENSSSCG00000014048

2:70044379-70062364

CU469199,CH242-222J24,2:70023175-70114180
(Clone quality: bE222J24 on chr=2; Num_of_Contigs=4; )

HKDC1

ENSSSCG00000010252

14:75434265-75483470

CT737222,CH242-62M1,14:75343233-75510707
(Clone quality: bE62M1 on chr=14; Num_of_Contigs=1; )

HLA-B

ENSSSCG00000005715

1:286805591-286809925

HLA-B

ENSSSCG00000001410

7:27715820-27728074

CU467793,CH242-60C3,7:27581747-27762222
(Clone quality: bE60C3 on chr=7; Num_of_Contigs=1; )

HLA-B

ENSSSCG00000001400

7:27616916-27627904

CU467793,CH242-60C3,7:27581747-27762222
(Clone quality: bE60C3 on chr=7; Num_of_Contigs=1; )

HLA-B

ENSSSCG00000001409

7:27701255-27714990

CU467793,CH242-60C3,7:27581747-27762222
(Clone quality: bE60C3 on chr=7; Num_of_Contigs=1; )

HLA-DMA

ENSSSCG00000001470

7:29509208-29513680

CU618315,CH242-254M4,7:29473579-29573903
(Clone quality: bE254M4 on chr=7; Num_of_Contigs=1; )

HLA-DMB

ENSSSCG00000001469

7:29494987-29500822

CU618315,CH242-254M4,7:29473579-29573903
(Clone quality: bE254M4 on chr=7; Num_of_Contigs=1; )

HLA-DOA

ENSSSCG00000001472

7:29555426-29558418

CU618315,CH242-254M4,7:29473579-29573903
(Clone quality: bE254M4 on chr=7; Num_of_Contigs=1; )

HLA-DRA

ENSSSCG00000001453

7:29095605-29101239

CU468849,CH242-213K14,7:29079506-29272939
(Clone quality: bE213K14 on chr=7; Num_of_Contigs=6; )

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$version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010

Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
Search results:	Show Finished BAC Show unFinished BAC