A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
SSA1 location ⇒ 9:24620561-24620457   FP067384,CH242-487L1,9:24612861-24631798
(Clone quality: bE487L1 on chr=9; Num_of_Contigs=8; )
SSA1 location ⇒ 9:25737847-25737946   FP102205,CH242-5N9,9:25732142-25805608
(Clone quality: bE5N9 on chr=9; Num_of_Contigs=4; )
SSA1 location ⇒ 9:44524030-44524122   CU914235,CH242-177G19,9:44486144-44604301
(Clone quality: bE177G19 on chr=9; Num_of_Contigs=2; )
SSB ENSSSCG00000008015 3:35885199-35921315    
SSB ENSSSCG00000015938 15:71511519-71520569    
SSB ENSSSCG00000016488 18:6642616-6652619    
SSB location ⇒ 15:71515789-71515896   CU466304,CH242-524C22,15:71511304-71517994
(Clone quality: bE524C22 on chr=15; Num_of_Contigs=14; )
SSB location ⇒ 15:71515979-71516155   CU466304,CH242-524C22,15:71511304-71517994
(Clone quality: bE524C22 on chr=15; Num_of_Contigs=14; )
SSB location ⇒ 15:71517007-71517115   CU466304,CH242-524C22,15:71511304-71517994
(Clone quality: bE524C22 on chr=15; Num_of_Contigs=14; )
SSB location ⇒ 15:71517212-71517315   CU466304,CH242-524C22,15:71511304-71517994
(Clone quality: bE524C22 on chr=15; Num_of_Contigs=14; )
SSBP1   ENSSSCG00000016488 18:6642616-6652619    
SSBP2   ENSSSCG00000014131 2:79266826-79504539    
ssc-let-7c   ENSSSCG00000018164 13:130665021-130665114   CU467004,CH242-179C11,13:130532232-130709569
(Clone quality: bE179C11 on chr=13; Num_of_Contigs=1; )
ssc-let-7f   ENSSSCG00000019098 X:45720363-45720445   CU695116,CH242-358M12,X:45706293-45760776
(Clone quality: bE358M12 on chr=X; Num_of_Contigs=4; )
ssc-let-7i   ENSSSCG00000019827 5:26807364-26807448   CU862074,CH242-76C2,5:26792234-26839397
(Clone quality: bE76C2 on chr=5; Num_of_Contigs=7; )
ssc-mir-101a-   ENSSSCG00000019459 1:227255282-227255372   CU467061,CH242-40P15,1:227205229-227339524
(Clone quality: bE40P15 on chr=1; Num_of_Contigs=2; )
ssc-mir-101a-   ENSSSCG00000019990 6:103818807-103818889   CU457759,CH242-261B4,6:103779721-103845013
(Clone quality: bE261B4 on chr=6; Num_of_Contigs=4; )
ssc-mir-103   ENSSSCG00000018886 16:52667657-52667738   CU694725,CH242-378M19,16:52635298-52689407
(Clone quality: bE378M19 on chr=16; Num_of_Contigs=12; )
ssc-mir-105-1   ENSSSCG00000019846 X:121722373-121722453 FP017298,CH242-217M1,X:121665273-121734936
(Clone quality: bE217M1 on chr=X; Num_of_Contigs=4; ) 		 
ssc-mir-105-2   ENSSSCG00000019675 X:121720259-121720338 FP017298,CH242-217M1,X:121665273-121734936
(Clone quality: bE217M1 on chr=X; Num_of_Contigs=4; ) 		 
ssc-mir-106a   ENSSSCG00000019162 X:108213079-108213159 FP015951,CH242-54G11,X:108183838-108371118
(Clone quality: bE54G11 on chr=X; Num_of_Contigs=1; ) 		 
ssc-mir-107   ENSSSCG00000019740 14:106321702-106321788   CT955956,CH242-196P20,14:106288428-106418350
(Clone quality: bE196P20 on chr=14; Num_of_Contigs=2; )
ssc-mir-122   ENSSSCG00000019572 1:169284211-169284295   CU062642,CH242-134P7,1:169203774-169351450
(Clone quality: bE134P7 on chr=1; Num_of_Contigs=3; )
ssc-mir-124a-   ENSSSCG00000019505 4:72452797-72452901   CU138556,CH242-133J6,4:72448721-72461730
(Clone quality: bE133J6 on chr=4; Num_of_Contigs=13; )
ssc-mir-124a-   ENSSSCG00000020033 14:13279339-13279423   CU407072,CH242-367D8,14:13216071-13281962
(Clone quality: bE367D8 on chr=14; Num_of_Contigs=3; )
ssc-mir-128   ENSSSCG00000019503 15:14550874-14550955   CU856241,CH242-144P8,15:14548191-14594581
(Clone quality: bE144P8 on chr=15; Num_of_Contigs=4; )
ssc-mir-130a   ENSSSCG00000019281 2:11301854-11301932   CU914175,CH242-140O21,2:11248278-11317852
(Clone quality: bE140O21 on chr=2; Num_of_Contigs=3; )
ssc-mir-133a   ENSSSCG00000018790 17:64053943-64054045   CU607084,CH242-119P9,17:64030790-64054686
(Clone quality: bE119P9 on chr=17; Num_of_Contigs=6; )
ssc-mir-135-1   ENSSSCG00000018452 13:28964466-28964555   CU915558,CH242-407L22,13:28951297-29012322
(Clone quality: bE407L22 on chr=13; Num_of_Contigs=4; )
ssc-mir-135-2   ENSSSCG00000018866 5:81615635-81615734   FP102398,CH242-79E15,5:81597059-81679229
(Clone quality: bE79E15 on chr=5; Num_of_Contigs=1; )
ssc-mir-136   ENSSSCG00000018419 7:133834348-133834429   CU928466,CH242-83L15,7:133833323-133840354
(Clone quality: bE83L15 on chr=7; Num_of_Contigs=27; )
ssc-mir-139   ENSSSCG00000018907 9:6808359-6808426   FP236396,CH242-30A23,9:6800663-6867788
(Clone quality: bE30A23 on chr=9; Num_of_Contigs=2; )
ssc-mir-145   ENSSSCG00000018513 2:136032141-136032226   CU694929,CH242-55J13,2:135975430-136052686
(Clone quality: bE55J13 on chr=2; Num_of_Contigs=3; )
ssc-mir-146b   ENSSSCG00000019981 14:118471588-118471686   CU498828,CH242-221N13,14:118465823-118488645
(Clone quality: bE221N13 on chr=14; Num_of_Contigs=8; )
ssc-mir-148a   ENSSSCG00000018277 18:45214548-45214615   CU855611,CH242-341P10,18:45201442-45239256
(Clone quality: bE341P10 on chr=18; Num_of_Contigs=6; )
ssc-mir-15a   ENSSSCG00000019092 11:17602976-17603058   CU062573,CH242-415L14,11:17600702-17628394
(Clone quality: bE415L14 on chr=11; Num_of_Contigs=7; )
ssc-mir-15b   ENSSSCG00000019020 13:78787511-78787608   CU466375,CH242-17F2,13:78718958-78854255
(Clone quality: bE17F2 on chr=13; Num_of_Contigs=7; )
ssc-mir-16-1   ENSSSCG00000019808 11:17603121-17603199   CU062573,CH242-415L14,11:17600702-17628394
(Clone quality: bE415L14 on chr=11; Num_of_Contigs=7; )
ssc-mir-16-2   ENSSSCG00000019389 13:78787668-78787744   CU466375,CH242-17F2,13:78718958-78854255
(Clone quality: bE17F2 on chr=13; Num_of_Contigs=7; )
ssc-mir-17   ENSSSCG00000018617 11:60972458-60972534   CU019588,CH242-392I14,11:60970571-61005671
(Clone quality: bE392I14 on chr=11; Num_of_Contigs=5; )
ssc-mir-18   ENSSSCG00000019535 11:60972593-60972684   CU019588,CH242-392I14,11:60970571-61005671
(Clone quality: bE392I14 on chr=11; Num_of_Contigs=5; )
ssc-mir-181a   ENSSSCG00000019722 10:22839352-22839455   CU855509,CH242-238P15,10:22830251-22982461
(Clone quality: bE238P15 on chr=10; Num_of_Contigs=2; )
ssc-mir-181b   ENSSSCG00000019719 1:280335865-280335953   CU468031,CH242-524N14,1:280318183-280492192
(Clone quality: bE524N14 on chr=1; Num_of_Contigs=1; )
ssc-mir-181c   ENSSSCG00000019548 2:56889312-56889408   FP016000,CH242-10C10,2:56824783-56952713
(Clone quality: bE10C10 on chr=2; Num_of_Contigs=2; )
ssc-mir-183   ENSSSCG00000018417 18:17172238-17172307   CU695052,CH242-289O4,18:17161795-17198923
(Clone quality: bE289O4 on chr=18; Num_of_Contigs=8; )
ssc-mir-184   ENSSSCG00000019343 7:54379989-54380071   CT955991,CH242-337J20,7:54206193-54404461
(Clone quality: bE337J20 on chr=7; Num_of_Contigs=1; )
ssc-mir-185   ENSSSCG00000019684 14:52703712-52703787   CT737345,CH242-178J1,14:52684022-52723015
(Clone quality: bE178J1 on chr=14; Num_of_Contigs=3; )
ssc-mir-186   ENSSSCG00000019065 6:99703517-99703598   CU928877,CH242-191N20,6:99691030-99734657
(Clone quality: bE191N20 on chr=6; Num_of_Contigs=4; )
ssc-mir-199b   ENSSSCG00000019744 1:283325974-283326073   CU234126,CH242-282L14,1:283270038-283452033
(Clone quality: bE282L14 on chr=1; Num_of_Contigs=4; )
ssc-mir-19a   ENSSSCG00000019897 11:60972741-60972822   CU019588,CH242-392I14,11:60970571-61005671
(Clone quality: bE392I14 on chr=11; Num_of_Contigs=5; )
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-750, 751-800, 801-850, 851-900, 901-950, 951-1000, 1001-1050, 1051-1100, 1101-1150, 1151-1200, 1201-1250, 1251-1300, 1301-1350, 1351-1400, 1401-1450, 1451-1500, 1501-1550, 1551-1600, 1601-1650, 1651-1700, 1701-1750, 1751-1800, 1801-1850, 1851-1900, 1901-1950, 1951-2000, 2001-2050, 2051-2100, 2101-2150, 2151-2200, 2201-2250, 2251-2300, 2301-2350, 2351-2400, 2401-2450, 2451-2500, 2501-2550, 2551-2600, 2601-16

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

© 2003-2025: USA · USDA · NRPSP8 · Program to Accelerate Animal Genomics Applications. Contact: Bioinformatics Team