A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
VPS18   ENSSSCG00000004757 1:136907126-136915920    
VPS26A   ENSSSCG00000010250 14:75365753-75388011   CT737222,CH242-62M1,14:75343233-75510707
(Clone quality: bE62M1 on chr=14; Num_of_Contigs=1; )
VPS26B   ENSSSCG00000015261 9:59358833-59361999   CU695185,CH242-262D16,9:59357111-59367186
(Clone quality: bE262D16 on chr=9; Num_of_Contigs=8; )
VPS28   ENSSSCG00000005904 4:479519-484656   CU468594,CH242-10O17,4:452294-503687
(Clone quality: bE10O17 on chr=4; Num_of_Contigs=10; )
VPS29   ENSSSCG00000009823 14:31887656-31896582   CU467926,CH242-205M8,14:31881751-31904291
(Clone quality: bE205M8 on chr=14; Num_of_Contigs=11; )
VPS33A ENSSSCG00000009800 14:30677032-30847252    
VPS36   ENSSSCG00000009376 11:15664041-15695516   CU856639,CH242-171M18,11:15650799-15766267
(Clone quality: bE171M18 on chr=11; Num_of_Contigs=3; )
VPS37A   ENSSSCG00000006984 17:4692610-4730303    
VPS37B   ENSSSCG00000009785 14:30038728-30068605   CU467951,CH242-194A1,14:29993953-30104296
(Clone quality: bE194A1 on chr=14; Num_of_Contigs=2; )
VPS37C   ENSSSCG00000013112 2:9468237-9474660   CU914270,CH242-323D11,2:9465978-9475219
(Clone quality: bE323D11 on chr=2; Num_of_Contigs=11; )
VPS37D   ENSSSCG00000007707 3:9163853-9166918   CU655977,CH242-166N19,3:9153157-9168701
(Clone quality: bE166N19 on chr=3; Num_of_Contigs=8; )
VPS39   ENSSSCG00000004731 1:135399071-135448798    
VPS41   ENSSSCG00000016772 18:53870440-54034434    
VPS45   ENSSSCG00000006661 4:102896873-102990137    
VPS45A ENSSSCG00000006661 4:102896873-102990137    
VPS45A location ⇒ 4:102562482-102562313   CU856122,CH242-64C14,4:102561130-102587241
(Clone quality: bE64C14 on chr=4; Num_of_Contigs=4; )
VPS45A location ⇒ 4:102627657-102627818   CU856122,CH242-64C14,4:102618018-102630769
(Clone quality: bE64C14 on chr=4; Num_of_Contigs=4; )
VPS45A location ⇒ 4:102963132-102962971   CU468404,CH242-257B23,4:102956300-103008917
(Clone quality: bE257B23 on chr=4; Num_of_Contigs=10; )
VPS45A location ⇒ 4:102974224-102974055   CU468404,CH242-257B23,4:102956300-103008917
(Clone quality: bE257B23 on chr=4; Num_of_Contigs=10; )
VPS4A   ENSSSCG00000002757 6:12465744-12467331   FP015939,CH242-384D23,6:12465602-12559923
(Clone quality: bE384D23 on chr=6; Num_of_Contigs=2; )
VPS4B   ENSSSCG00000004893 1:165195159-165226699    
VPS52   ENSSSCG00000001501 7:34031584-34046050 CU607018,CH242-138E20,7:33930957-34116846
(Clone quality: bE138E20 on chr=7; Num_of_Contigs=1; ) 		 
VPS53   ENSSSCG00000017812 12:45056839-45201507    
VPS54   ENSSSCG00000008367 3:71835007-71853437   CU466372,CH242-173O12,3:71834920-71867127
(Clone quality: bE173O12 on chr=3; Num_of_Contigs=11; )
VPS72   ENSSSCG00000006630 4:102016606-102028357 CU138569,CH242-265M12,4:101911025-102092543
(Clone quality: bE265M12 on chr=4; Num_of_Contigs=8; ) 		 
VPS8   ENSSSCG00000011788 13:92760005-92815018    
VRK1   ENSSSCG00000002506 7:127029340-127072433   CT737405,CH242-19F22,7:126946529-127073397
(Clone quality: bE19F22 on chr=7; Num_of_Contigs=3; )
VRK2 ENSSSCG00000008395 3:77335157-77433135    
VRK3   ENSSSCG00000003204 6:38649955-38686382    
VSIG1 ENSSSCG00000012567 X:86641500-86706699    
VSIG1 location ⇒ X:86688235-86688400   CU862054,CH242-32D24,X:86669179-86707732
(Clone quality: bE32D24 on chr=X; Num_of_Contigs=4; )
VSIG1 location ⇒ X:86694585-86694784   CU862054,CH242-32D24,X:86669179-86707732
(Clone quality: bE32D24 on chr=X; Num_of_Contigs=4; )
VSIG1 location ⇒ X:86701458-86701615   CU862054,CH242-32D24,X:86669179-86707732
(Clone quality: bE32D24 on chr=X; Num_of_Contigs=4; )
VSIG1 location ⇒ X:86702003-86702122   CU862054,CH242-32D24,X:86669179-86707732
(Clone quality: bE32D24 on chr=X; Num_of_Contigs=4; )
VSIG10   ENSSSCG00000009852 14:34791193-34836013    
VSIG10L   ENSSSCG00000003228 6:39372841-39379395   CU694842,CH242-204P3,6:39364788-39379406
(Clone quality: bE204P3 on chr=6; Num_of_Contigs=6; )
VSIG2 ENSSSCG00000015199 9:50435242-50439840   CU640461,CH242-276C18,9:50414361-50466713
(Clone quality: bE276C18 on chr=9; Num_of_Contigs=3; )
VSIG2 location ⇒ 9:50436415-50436294   CU640461,CH242-276C18,9:50414361-50466713
(Clone quality: bE276C18 on chr=9; Num_of_Contigs=3; )
VSIG2 location ⇒ 9:50437485-50437326   CU640461,CH242-276C18,9:50414361-50466713
(Clone quality: bE276C18 on chr=9; Num_of_Contigs=3; )
VSIG2 location ⇒ 9:50438513-50438306   CU640461,CH242-276C18,9:50414361-50466713
(Clone quality: bE276C18 on chr=9; Num_of_Contigs=3; )
VSIG2 location ⇒ 9:50439270-50439106   CU640461,CH242-276C18,9:50414361-50466713
(Clone quality: bE276C18 on chr=9; Num_of_Contigs=3; )
VSIG4 ENSSSCG00000012364 X:51222232-51244242    
VSIG4 location ⇒ X:51228250-51228607   CU550724,CH242-208K6,X:51222677-51231063
(Clone quality: bE208K6 on chr=X; Num_of_Contigs=7; )
VSIG4 location ⇒ X:51229310-51229591   CU550724,CH242-208K6,X:51222677-51231063
(Clone quality: bE208K6 on chr=X; Num_of_Contigs=7; )
VSIG4 location ⇒ X:51241045-51241139   CU550724,CH242-208K6,X:51231164-51247739
(Clone quality: bE208K6 on chr=X; Num_of_Contigs=7; )
VSIG4 location ⇒ X:51243703-51243938   CU550724,CH242-208K6,X:51231164-51247739
(Clone quality: bE208K6 on chr=X; Num_of_Contigs=7; )
VSIG8   ENSSSCG00000006399 4:94012226-94019244   CU856127,CH242-86L20,4:93963235-94027316
(Clone quality: bE86L20 on chr=4; Num_of_Contigs=6; )
VSNL1   ENSSSCG00000008615 3:111558004-111667813    
VSTM1   ENSSSCG00000003260 6:40483065-40495712   FP102634,CH242-226O14,6:40460999-40507766
(Clone quality: bE226O14 on chr=6; Num_of_Contigs=5; )
VSTM2A   ENSSSCG00000015636 9:130663546-130687161   CU633637,CH242-150L13,9:130651995-130714221
(Clone quality: bE150L13 on chr=9; Num_of_Contigs=5; )
Go to records:
1-49, 50-100, 101-150, 151-200, 201-24

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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