A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
SCAND1   ENSSSCG00000007312 17:41389921-41390460   CU633927,CH242-284L12,17:41359724-41396743
(Clone quality: bE284L12 on chr=17; Num_of_Contigs=12; )
SCAP1 ENSSSCG00000017527 12:21831008-21883082   FP016123,CH242-397L8,12:21776694-21937896
(Clone quality: bE397L8 on chr=12; Num_of_Contigs=6; )
SCAP1 location ⇒ 12:21831008-21831086   FP016123,CH242-397L8,12:21776694-21937896
(Clone quality: bE397L8 on chr=12; Num_of_Contigs=6; )
SCAP1 location ⇒ 12:21835125-21835231   FP016123,CH242-397L8,12:21776694-21937896
(Clone quality: bE397L8 on chr=12; Num_of_Contigs=6; )
SCAP1 location ⇒ 12:22019078-22018959   CU855490,CH242-137E20,12:21945350-22023684
(Clone quality: bE137E20 on chr=12; Num_of_Contigs=7; )
SCAP1 location ⇒ 12:22159648-22159539   CU570713,CH242-166L13,12:22156530-22160485
(Clone quality: bE166L13 on chr=12; Num_of_Contigs=17; )
SCAPER ENSSSCG00000001865 7:62021108-62305589    
SCAPER location ⇒ 7:62167215-62167061   CU468689,CH242-106B6,7:62159007-62168964
(Clone quality: bE106B6 on chr=7; Num_of_Contigs=2; )
SCAPER location ⇒ 7:62207907-62207652   CT868728,CH242-234A20,7:62168965-62277689
(Clone quality: bE234A20 on chr=7; Num_of_Contigs=3; )
SCAPER location ⇒ 7:62266532-62266461   CT868728,CH242-234A20,7:62168965-62277689
(Clone quality: bE234A20 on chr=7; Num_of_Contigs=3; )
SCAPER location ⇒ 7:62287725-62287658   CT868728,CH242-234A20,7:62277790-62311591
(Clone quality: bE234A20 on chr=7; Num_of_Contigs=3; )
SCAP_PIG   ENSSSCG00000011337 13:25286969-25331377   CU633348,CH242-158N8,13:25277659-25344664
(Clone quality: bE158N8 on chr=13; Num_of_Contigs=9; )
SCAP_PIG   ENSSSCG00000011335 13:25148651-25193199    
SCARA5 ENSSSCG00000009672 14:11622486-11752749    
SCARA5 location ⇒ 14:11621892-11620617   CU656007,CH242-32D13,14:11583515-11669699
(Clone quality: bE32D13 on chr=14; Num_of_Contigs=2; )
SCARB1 ENSSSCG00000009759 14:28301332-28491610    
SCARB1 location ⇒ 14:104594628-104594687   CU468203,CH242-430E15,14:104580413-104635374
(Clone quality: bE430E15 on chr=14; Num_of_Contigs=6; )
SCARB1 location ⇒ 14:104594714-104594788   CU468203,CH242-430E15,14:104580413-104635374
(Clone quality: bE430E15 on chr=14; Num_of_Contigs=6; )
SCARB1 location ⇒ 14:28392598-28393560   CU633504,CH242-250J21,14:28342281-28423425
(Clone quality: bE250J21 on chr=14; Num_of_Contigs=3; )
SCARB1 location ⇒ 14:28490635-28491597   CU487224,CH242-37A14,14:28488162-28495190
(Clone quality: bE37A14 on chr=14; Num_of_Contigs=13; )
SCARB2 ENSSSCG00000008980 8:61266681-61335669   FP016186,CH242-145A12,8:61242261-61350140
(Clone quality: bE145A12 on chr=8; Num_of_Contigs=1; )
Scarb2 location ⇒ 8:61267006-61266217   FP016186,CH242-145A12,8:61242261-61350140
(Clone quality: bE145A12 on chr=8; Num_of_Contigs=1; )
Scarb2 location ⇒ 8:61280874-61280700   FP016186,CH242-145A12,8:61242261-61350140
(Clone quality: bE145A12 on chr=8; Num_of_Contigs=1; )
Scarb2 location ⇒ 8:61300352-61300163   FP016186,CH242-145A12,8:61242261-61350140
(Clone quality: bE145A12 on chr=8; Num_of_Contigs=1; )
Scarb2 location ⇒ 8:61335480-61335245   FP016186,CH242-145A12,8:61242261-61350140
(Clone quality: bE145A12 on chr=8; Num_of_Contigs=1; )
SCARF2 ENSSSCG00000010109 14:51924446-51935107    
SCARF2 location ⇒ 14:51743658-51743489   CU606992,CH242-118C22,14:51743342-51747724
(Clone quality: bE118C22 on chr=14; Num_of_Contigs=5; )
SCARF2 location ⇒ 14:51743983-51743761   CU606992,CH242-118C22,14:51743342-51747724
(Clone quality: bE118C22 on chr=14; Num_of_Contigs=5; )
SCARF2 location ⇒ 14:51930276-51930106   CU468322,CH242-201I2,14:51920456-51934912
(Clone quality: bE201I2 on chr=14; Num_of_Contigs=7; )
SCARF2 location ⇒ 14:51930601-51930379   CU468322,CH242-201I2,14:51920456-51934912
(Clone quality: bE201I2 on chr=14; Num_of_Contigs=7; )
SCARNA11   ENSSSCG00000018288 5:60083851-60083990   CU914489,CH242-100M5,5:60080205-60088157
(Clone quality: bE100M5 on chr=5; Num_of_Contigs=13; )
SCARNA13   ENSSSCG00000018961 7:125614798-125615073 CT867964,CH242-267C2,7:125614014-125812235
(Clone quality: bE267C2 on chr=7; Num_of_Contigs=1; ) 		 
SCARNA14   ENSSSCG00000018666 1:171519508-171519643   CU062652,CH242-108M5,1:171491799-171560282
(Clone quality: bE108M5 on chr=1; Num_of_Contigs=3; )
SCARNA16   ENSSSCG00000020023 12:2880672-2880859 CU655873,CH242-326F7,12:2701845-2922206
(Clone quality: bE326F7 on chr=12; Num_of_Contigs=17; ) 		 
SCARNA17   ENSSSCG00000019703 1:102257381-102257526   CU618322,CH242-274A15,1:102245216-102266389
(Clone quality: bE274A15 on chr=1; Num_of_Contigs=10; )
SCARNA18   ENSSSCG00000018625 8:99325265-99325346   CU930042,CH242-378B3,8:99323412-99328223
(Clone quality: bE378B3 on chr=8; Num_of_Contigs=28; )
SCARNA18   ENSSSCG00000018659 8:99579705-99579786   FP016084,CH242-131A9,8:99563173-99587162
(Clone quality: bE131A9 on chr=8; Num_of_Contigs=3; )
SCARNA18   ENSSSCG00000018821 1:102257608-102257690   CU618322,CH242-274A15,1:102245216-102266389
(Clone quality: bE274A15 on chr=1; Num_of_Contigs=10; )
SCARNA20   ENSSSCG00000018254 3:9292885-9293014   CU655977,CH242-166N19,3:9275764-9314897
(Clone quality: bE166N19 on chr=3; Num_of_Contigs=8; )
SCARNA21   ENSSSCG00000019112 12:50308702-50308839   FP102646,CH242-247L12,12:50306024-50319486
(Clone quality: bE247L12 on chr=12; Num_of_Contigs=8; )
SCARNA21   ENSSSCG00000019088 12:50144071-50144208   CU972380,CH242-124B22,12:50126282-50177524
(Clone quality: bE124B22 on chr=12; Num_of_Contigs=7; )
SCARNA23   ENSSSCG00000019650 8:336404-336527   FP102229,CH242-106H10,8:324161-350156
(Clone quality: bE106H10 on chr=8; Num_of_Contigs=8; )
SCARNA24   ENSSSCG00000018575 X:19806209-19806338   CU570746,CH242-359E24,X:19769349-19818431
(Clone quality: bE359E24 on chr=X; Num_of_Contigs=7; )
SCARNA3   ENSSSCG00000018443 9:110897425-110897560   CU855662,CH242-3H1,9:110829420-110939504
(Clone quality: bE3H1 on chr=9; Num_of_Contigs=5; )
SCARNA4   ENSSSCG00000019282 4:98051782-98051912   CU151868,CH242-286M6,4:97945564-98074701
(Clone quality: bE286M6 on chr=4; Num_of_Contigs=4; )
SCARNA6   ENSSSCG00000019954 15:126248224-126248499   FP102656,CH242-26J3,15:126243395-126266604
(Clone quality: bE26J3 on chr=15; Num_of_Contigs=12; )
SCARNA8   ENSSSCG00000019776 1:212595294-212595424   CU633206,CH242-117K11,1:212551177-212716212
(Clone quality: bE117K11 on chr=1; Num_of_Contigs=2; )
SCD ENSSSCG00000010554 14:116330565-116346795   CT827831,CH242-224L12,14:116263324-116390345
(Clone quality: bE224L12 on chr=14; Num_of_Contigs=2; )
SCD location ⇒ 14:108693-108786   CU571022,CH242-21I12,14:8902-208834
(Clone quality: bE21I12 on chr=14; Num_of_Contigs=5; )
SCD location ⇒ 14:13310-13213   CU571022,CH242-21I12,14:8902-208834
(Clone quality: bE21I12 on chr=14; Num_of_Contigs=5; )
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-750, 751-800, 801-850, 851-900, 901-950, 951-1000, 1001-1050, 1051-1100, 1101-1150, 1151-1200, 1201-1250, 1251-1300, 1301-1350, 1351-1400, 1401-1450, 1451-1500, 1501-1550, 1551-1600, 1601-1650, 1651-1700, 1701-1750, 1751-1800, 1801-1850, 1851-1900, 1901-1950, 1951-2000, 2001-2050, 2051-2100, 2101-2150, 2151-2200, 2201-2250, 2251-2300, 2301-2350, 2351-2400, 2401-2450, 2451-2500, 2501-2550, 2551-2600, 2601-16

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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