A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
VIM ENSSSCG00000011033 10:41795515-41804213   CU570641,CH242-190K24,10:41776330-41805430
(Clone quality: bE190K24 on chr=10; Num_of_Contigs=3; )
VIM location ⇒ 10:41795567-41796254   CU570641,CH242-190K24,10:41776330-41805430
(Clone quality: bE190K24 on chr=10; Num_of_Contigs=3; )
VIM location ⇒ 10:41796877-41796938   CU570641,CH242-190K24,10:41776330-41805430
(Clone quality: bE190K24 on chr=10; Num_of_Contigs=3; )
VIM location ⇒ 10:41801209-41801430   CU570641,CH242-190K24,10:41776330-41805430
(Clone quality: bE190K24 on chr=10; Num_of_Contigs=3; )
VIM location ⇒ 10:41803847-41804211   CU570641,CH242-190K24,10:41776330-41805430
(Clone quality: bE190K24 on chr=10; Num_of_Contigs=3; )
VIP ENSSSCG00000016403 18:91259-132891    
VIP ENSSSCG00000011280 13:21872535-21944268    
VIP ENSSSCG00000013869 2:61413944-61520376    
VIP location ⇒ 1:14467182-14467047   CU896687,CH242-127E6,1:14458276-14468679
(Clone quality: bE127E6 on chr=1; Num_of_Contigs=14; )
VIP location ⇒ 1:14556538-14556654   CU468074,CH242-467P9,1:14556017-14567443
(Clone quality: bE467P9 on chr=1; Num_of_Contigs=23; )
VIP location ⇒ 1:14558488-14558603   CU468074,CH242-467P9,1:14556017-14567443
(Clone quality: bE467P9 on chr=1; Num_of_Contigs=23; )
VIP location ⇒ 1:14560373-14560508   CU468074,CH242-467P9,1:14556017-14567443
(Clone quality: bE467P9 on chr=1; Num_of_Contigs=23; )
VIPR1 ENSSSCG00000011280 13:21872535-21944268    
VIPR1 location ⇒ 13:38383577-38383649   FP236724,CH242-470O1,13:38380123-38389002
(Clone quality: bE470O1 on chr=13; Num_of_Contigs=19; )
VIPR1 location ⇒ 13:42495634-42495562   CU856699,CH242-303A24,13:42454474-42514685
(Clone quality: bE303A24 on chr=13; Num_of_Contigs=5; )
VIPR1 location ⇒ 13:5547551-5547627   CU972467,CH242-419L13,13:5543398-5562050
(Clone quality: bE419L13 on chr=13; Num_of_Contigs=9; )
VIPR1 location ⇒ 13:56698979-56698908   CU915692,CH242-255I14,13:56685271-56721359
(Clone quality: bE255I14 on chr=13; Num_of_Contigs=3; )
VIPR2 ENSSSCG00000016403 18:91259-132891    
VISA location ⇒ 17:33455767-33455265   FP236531,CH242-39P18,17:33454798-33461893
(Clone quality: bE39P18 on chr=17; Num_of_Contigs=7; )
VISA location ⇒ 17:33459837-33459665   FP236531,CH242-39P18,17:33454798-33461893
(Clone quality: bE39P18 on chr=17; Num_of_Contigs=7; )
VISA location ⇒ 17:33461553-33461375   FP236531,CH242-39P18,17:33454798-33461893
(Clone quality: bE39P18 on chr=17; Num_of_Contigs=7; )
VISA location ⇒ 17:33616602-33617059   FP236531,CH242-39P18,17:33616149-33618265
(Clone quality: bE39P18 on chr=17; Num_of_Contigs=7; )
VKORC1 ENSSSCG00000007764 3:15891234-15894036    
VKORC1 location ⇒ 3:15891280-15891485   CU464163,CH242-418M3,3:15802333-15893853
(Clone quality: bE418M3 on chr=3; Num_of_Contigs=3; )
VKORC1 location ⇒ 3:15892285-15892405   CU464163,CH242-418M3,3:15802333-15893853
(Clone quality: bE418M3 on chr=3; Num_of_Contigs=3; )
VKORC1 location ⇒ 3:15893564-15893838   CU464163,CH242-418M3,3:15802333-15893853
(Clone quality: bE418M3 on chr=3; Num_of_Contigs=3; )
VLA1 ENSSSCG00000016885 16:29202547-29281645    
VLA3a ENSSSCG00000017578 12:24655910-24790905    
VMA21   ENSSSCG00000012746 X:120851308-120857966 FP015864,CH242-76P15,X:120821749-121016103
(Clone quality: bE76P15 on chr=X; Num_of_Contigs=1; ) 		 
VMAC   ENSSSCG00000013531 2:49547983-49550025   FP089464,CH242-231P22,2:49500853-49563374
(Clone quality: bE231P22 on chr=2; Num_of_Contigs=4; )
VMO1   ENSSSCG00000017915 12:49303793-49304847   CU929524,CH242-164N17,12:49282475-49313175
(Clone quality: bE164N17 on chr=12; Num_of_Contigs=22; )
VN1R4   ENSSSCG00000005765 1:290066004-290066924   FP015889,CH242-169M17,1:290041673-290092255
(Clone quality: bE169M17 on chr=1; Num_of_Contigs=7; )
VNN1 ENSSSCG00000004181 1:32494246-32515497   CU041311,CH242-393L4,1:32405122-32529539
(Clone quality: bE393L4 on chr=1; Num_of_Contigs=2; )
VNN1 location ⇒ 1:126455492-126455388   CU618306,CH242-110E11,1:126436036-126465949
(Clone quality: bE110E11 on chr=1; Num_of_Contigs=16; )
VNN1 location ⇒ 1:126720228-126720332   CU571408,CH242-238O3,1:126712057-126779651
(Clone quality: bE238O3 on chr=1; Num_of_Contigs=8; )
VNN1 location ⇒ 1:142049389-142049457   CU234198,CH242-208D1,1:142032048-142113418
(Clone quality: bE208D1 on chr=1; Num_of_Contigs=3; )
VNN1 location ⇒ 1:32480929-32481037   CU041311,CH242-393L4,1:32405122-32529539
(Clone quality: bE393L4 on chr=1; Num_of_Contigs=2; )
VNN2   ENSSSCG00000004179 1:32452442-32461793   CU041311,CH242-393L4,1:32405122-32529539
(Clone quality: bE393L4 on chr=1; Num_of_Contigs=2; )
VNN3   ENSSSCG00000004180 1:32472469-32483872   CU041311,CH242-393L4,1:32405122-32529539
(Clone quality: bE393L4 on chr=1; Num_of_Contigs=2; )
VPRBP   ENSSSCG00000011417 13:28369017-28417178   CU633548,CH242-178K10,13:28368612-28496727
(Clone quality: bE178K10 on chr=13; Num_of_Contigs=3; )
VPREB1 location ⇒ 17:49757408-49757554   CU606851,CH242-219J22,17:49753742-49764208
(Clone quality: bE219J22 on chr=17; Num_of_Contigs=12; )
VPREB1 location ⇒ 17:49760551-49760704   CU606851,CH242-219J22,17:49753742-49764208
(Clone quality: bE219J22 on chr=17; Num_of_Contigs=12; )
VPREB1 location ⇒ 17:49837028-49837181   CU683881,CH242-15E11,17:49835664-49840881
(Clone quality: bE15E11 on chr=17; Num_of_Contigs=8; )
VPREB1 location ⇒ 17:49842452-49842306   CU683881,CH242-15E11,17:49840982-49846217
(Clone quality: bE15E11 on chr=17; Num_of_Contigs=8; )
VPREB3 ENSSSCG00000010075 14:50942827-50944083   CU468588,CH242-282B12,14:50917167-50969731
(Clone quality: bE282B12 on chr=14; Num_of_Contigs=2; )
VPS11   ENSSSCG00000015107 9:44876331-44909814    
VPS13A   ENSSSCG00000005282 1:240779619-241047261    
VPS13C   ENSSSCG00000004574 1:113258720-113426286    
VPS13D   ENSSSCG00000003438 6:49281316-49481831    
VPS16A   ENSSSCG00000007167 17:34376484-34398823   CU915714,CH242-485K7,17:34371140-34404136
(Clone quality: bE485K7 on chr=17; Num_of_Contigs=3; )
Go to records:
1-49, 50-100, 101-150, 151-200, 201-24

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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