A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
HCK ENSSSCG00000007240 17:37748217-37789548    
HCK location ⇒ 17:25412184-25412131   CU467558,CH242-311N22,17:25361003-25466443
(Clone quality: bE311N22 on chr=17; Num_of_Contigs=2; )
HCK location ⇒ 17:272710-272655   CU606846,CH242-119B19,17:266273-280745
(Clone quality: bE119B19 on chr=17; Num_of_Contigs=11; )
HCK location ⇒ 17:38051-38106   CU855955,CH242-102E13,17:32773-39851
(Clone quality: bE102E13 on chr=17; Num_of_Contigs=18; )
HCK location ⇒ 17:44391464-44391375   CU019566,CH242-11M11,17:44377462-44443743
(Clone quality: bE11M11 on chr=17; Num_of_Contigs=6; )
HCLS1 ENSSSCG00000006552 4:99511543-99514186   CU856218,CH242-277E7,4:99509313-99581754
(Clone quality: bE277E7 on chr=4; Num_of_Contigs=4; )
HCLS1 ENSSSCG00000011884 13:104386937-104415076    
HCLS1 ENSSSCG00000008597 3:109351071-109358373   CU928464,CH242-36I6,3:109335300-109368296
(Clone quality: bE36I6 on chr=3; Num_of_Contigs=5; )
HCLS1 location ⇒ 13:104398995-104399124   CU861646,CH242-92B4,13:104379282-104399536
(Clone quality: bE92B4 on chr=13; Num_of_Contigs=11; )
HCLS1 location ⇒ 13:104412410-104412623   CU861646,CH242-92B4,13:104399637-104414676
(Clone quality: bE92B4 on chr=13; Num_of_Contigs=11; )
HCLS1 location ⇒ 13:104414333-104414676    
HCLS1 location ⇒ 13:104414806-104415150   CU861646,CH242-92B4,13:104414777-104423822
(Clone quality: bE92B4 on chr=13; Num_of_Contigs=11; )
HCN3   ENSSSCG00000006518 4:98625633-98636064    
HCN4   ENSSSCG00000001920 7:65500512-65540727    
HCRT   ENSSSCG00000017410 12:18320991-18322387   CU856598,CH242-362F6,12:18319906-18418389
(Clone quality: bE362F6 on chr=12; Num_of_Contigs=5; )
HCRTR1   ENSSSCG00000003601 6:60435685-60445620   CU856262,CH242-97A12,6:60434458-60488383
(Clone quality: bE97A12 on chr=6; Num_of_Contigs=8; )
HCRTR2   ENSSSCG00000001481 7:30205006-30304413    
HCST ENSSSCG00000004304 1:58538518-58635311    
HCST ENSSSCG00000002918 6:30464394-30465907   CU466979,CH242-510C11,6:30452219-30481257
(Clone quality: bE510C11 on chr=6; Num_of_Contigs=10; )
HCST location ⇒ 6:30464454-30464718   CU466979,CH242-510C11,6:30452219-30481257
(Clone quality: bE510C11 on chr=6; Num_of_Contigs=10; )
HCST location ⇒ 6:30464784-30465572   CU466979,CH242-510C11,6:30452219-30481257
(Clone quality: bE510C11 on chr=6; Num_of_Contigs=10; )
HCST location ⇒ 6:30465637-30465984   CU466979,CH242-510C11,6:30452219-30481257
(Clone quality: bE510C11 on chr=6; Num_of_Contigs=10; )
HCST location ⇒ 6:30466037-30466261   CU466979,CH242-510C11,6:30452219-30481257
(Clone quality: bE510C11 on chr=6; Num_of_Contigs=10; )
HDAC1 ENSSSCG00000003613 6:60860606-60870635    
HDAC1 location ⇒ 6:60860610-60860684   FP102820,CH242-217B19,6:60857750-60862562
(Clone quality: bE217B19 on chr=6; Num_of_Contigs=18; )
HDAC1 location ⇒ 6:60863715-60863858   FP102820,CH242-217B19,6:60862663-60883389
(Clone quality: bE217B19 on chr=6; Num_of_Contigs=18; )
HDAC1 location ⇒ 6:60864314-60864456   FP102820,CH242-217B19,6:60862663-60883389
(Clone quality: bE217B19 on chr=6; Num_of_Contigs=18; )
HDAC1 location ⇒ 6:60865514-60865605   FP102820,CH242-217B19,6:60862663-60883389
(Clone quality: bE217B19 on chr=6; Num_of_Contigs=18; )
HDAC10   ENSSSCG00000000971 5:99814134-99819628    
HDAC11   ENSSSCG00000011608 13:58927063-58943879    
HDAC2 ENSSSCG00000004432 1:83603828-83637653    
HDAC2 location ⇒ 1:83604043-83604639   CU041333,CH242-408N4,1:83582467-83637211
(Clone quality: bE408N4 on chr=1; Num_of_Contigs=4; )
HDAC3 ENSSSCG00000011760 13:87635591-87885374    
HDAC3 ENSSSCG00000014388 2:130183587-130197640   CU463118,CH242-312A3,2:130116991-130237824
(Clone quality: bE312A3 on chr=2; Num_of_Contigs=2; )
HDAC3 location ⇒ 2:130192048-130191913   CU463118,CH242-312A3,2:130116991-130237824
(Clone quality: bE312A3 on chr=2; Num_of_Contigs=2; )
HDAC3 location ⇒ 2:130196042-130195900   CU463118,CH242-312A3,2:130116991-130237824
(Clone quality: bE312A3 on chr=2; Num_of_Contigs=2; )
HDAC3 location ⇒ 2:130197428-130197343   CU463118,CH242-312A3,2:130116991-130237824
(Clone quality: bE312A3 on chr=2; Num_of_Contigs=2; )
HDAC3 location ⇒ 2:130197635-130197535   CU463118,CH242-312A3,2:130116991-130237824
(Clone quality: bE312A3 on chr=2; Num_of_Contigs=2; )
HDAC4 location ⇒ 13:102971-102862   CU928239,CH242-498F20,13:77539-107266
(Clone quality: bE498F20 on chr=13; Num_of_Contigs=4; )
HDAC4 location ⇒ 13:1672-1737   CU928239,CH242-498F20,13:1-4335
(Clone quality: bE498F20 on chr=13; Num_of_Contigs=4; )
HDAC4 location ⇒ 13:21605-21504   CU928239,CH242-498F20,13:4436-31895
(Clone quality: bE498F20 on chr=13; Num_of_Contigs=4; )
HDAC4 location ⇒ 13:225556-225447   CU856632,CH242-137I10,13:221126-230577
(Clone quality: bE137I10 on chr=13; Num_of_Contigs=11; )
HDAC5 ENSSSCG00000017366 12:17042278-17053184   CU469063,CH242-86P22,12:17031346-17053980
(Clone quality: bE86P22 on chr=12; Num_of_Contigs=21; )
HDAC5 location ⇒ 12:12177553-12177618   CU606903,CH242-358O17,12:12168415-12217906
(Clone quality: bE358O17 on chr=12; Num_of_Contigs=4; )
HDAC5 location ⇒ 12:15041223-15041308   CU693465,CH242-266I14,12:15004131-15051848
(Clone quality: bE266I14 on chr=12; Num_of_Contigs=9; )
HDAC5 location ⇒ 12:18509094-18509017   CU856598,CH242-362F6,12:18453794-18511165
(Clone quality: bE362F6 on chr=12; Num_of_Contigs=5; )
HDAC5 location ⇒ 12:6763598-6763679   CU928888,CH242-219F9,12:6760027-6769342
(Clone quality: bE219F9 on chr=12; Num_of_Contigs=24; )
HDAC7A location ⇒ 12:17044736-17044663   CU469063,CH242-86P22,12:17031346-17053980
(Clone quality: bE86P22 on chr=12; Num_of_Contigs=21; )
HDAC7A location ⇒ 12:17045367-17045279   CU469063,CH242-86P22,12:17031346-17053980
(Clone quality: bE86P22 on chr=12; Num_of_Contigs=21; )
HDAC7A location ⇒ 12:17049712-17049670   CU469063,CH242-86P22,12:17031346-17053980
(Clone quality: bE86P22 on chr=12; Num_of_Contigs=21; )
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-32

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Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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