Pig genome annotation: A Gene Wish List

A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )

User Gene List	Genome Location (Chr.:start-end)	Fell within Finished BACs (Contig, BACname, Chr.:Start-End)	Fell within Unfinished Clones (SeqName, Chr.:Start-End)
Symbol	Owner/ Status	Ensembl Gene ID

FAH		ENSSSCG00000001780	7:55053120-55093313
FAH		location ⇒	7:55053122-55053337		CU468492,CH242-383A3,7:54976614-55064573 (Clone quality: bE383A3 on chr=7; Num_of_Contigs=3; )
FAH		location ⇒	7:55060921-55061041		CU468492,CH242-383A3,7:54976614-55064573 (Clone quality: bE383A3 on chr=7; Num_of_Contigs=3; )
FAH		location ⇒	7:55079479-55079611		CU468492,CH242-383A3,7:55064674-55100509 (Clone quality: bE383A3 on chr=7; Num_of_Contigs=3; )
FAH		location ⇒	7:55093086-55093308		CU468492,CH242-383A3,7:55064674-55100509 (Clone quality: bE383A3 on chr=7; Num_of_Contigs=3; )
FAIM2		ENSSSCG00000000206	5:14411877-14437905
FAIM3		ENSSSCG00000015656	9:132076085-132090105
FAM100A		ENSSSCG00000007936	3:33735660-33739965		CU928821,CH242-271C18,3:33718585-33759648 (Clone quality: bE271C18 on chr=3; Num_of_Contigs=7; )
FAM100B		ENSSSCG00000017185	12:3563378-3567425	CU466934,CH242-34E1,12:3420589-3631790 (Clone quality: bE34E1 on chr=9; Num_of_Contigs=4; )
FAM101A		ENSSSCG00000009762	14:28922659-28938318		CT737269,CH242-39H19,14:28857968-28938515 (Clone quality: bE39H19 on chr=14; Num_of_Contigs=4; )
FAM101B		ENSSSCG00000017813	12:45220825-45226667		CU929257,CH242-474H6,12:45207156-45237223 (Clone quality: bE474H6 on chr=12; Num_of_Contigs=7; )
FAM102A		ENSSSCG00000005631	1:282971744-283006323		CU638853,CH242-308I15,1:282900893-283022455 (Clone quality: bE308I15 on chr=1; Num_of_Contigs=4; )
FAM102B		ENSSSCG00000006850	4:116319999-116391969		CU638666,CH242-141A1,4:116312606-116392354 (Clone quality: bE141A1 on chr=4; Num_of_Contigs=4; )
FAM103A1		ENSSSCG00000001803	7:57992167-57997493		CU407315,CH242-258B16,7:57856098-58033288 (Clone quality: bE258B16 on chr=7; Num_of_Contigs=2; )
FAM104A		ENSSSCG00000017247	12:5839731-5857212	CU929672,CH242-62J22,12:5703604-5857364 (Clone quality: bE62J22 on chr=12; Num_of_Contigs=4; )
FAM105A		ENSSSCG00000016782	16:3253976-3282242		CU915557,CH242-338H24,16:3196962-3291207 (Clone quality: bE338H24 on chr=16; Num_of_Contigs=4; )
FAM105B		ENSSSCG00000016783	16:3346962-3416334
FAM106B		ENSSSCG00000017683	12:36001102-36001326		CU928931,CH242-30N5,12:35994200-36016145 (Clone quality: bE30N5 on chr=12; Num_of_Contigs=5; )
FAM107A		ENSSSCG00000011478	13:33910584-33939011		CU927912,CH242-524I3,13:33910046-33973141 (Clone quality: bE524I3 on chr=13; Num_of_Contigs=9; )
FAM107B		location ⇒	10:44998080-44998200		CU929831,CH242-53K15,10:44993340-45064269 (Clone quality: bE53K15 on chr=10; Num_of_Contigs=3; )
FAM107B		location ⇒	10:45000680-45001066		CU929831,CH242-53K15,10:44993340-45064269 (Clone quality: bE53K15 on chr=10; Num_of_Contigs=3; )
FAM108C1		ENSSSCG00000001782	7:55546523-55604020		CU407044,CH242-214H8,7:55528438-55649767 (Clone quality: bE214H8 on chr=7; Num_of_Contigs=5; )
FAM110A		ENSSSCG00000007200	17:36227038-36227925		CU606947,CH242-281M14,17:36222478-36229838 (Clone quality: bE281M14 on chr=17; Num_of_Contigs=11; )
FAM110B		ENSSSCG00000006240	4:77442209-77443324	CU151871,CH242-290E19,4:77372663-77578094 (Clone quality: bE290E19 on chr=4; Num_of_Contigs=5; )
FAM111A		ENSSSCG00000013146	2:10337813-10342895		CU467529,CH242-205D7,2:10254345-10366022 (Clone quality: bE205D7 on chr=2; Num_of_Contigs=2; )
FAM111B		ENSSSCG00000013147	2:10353393-10362442		CU467529,CH242-205D7,2:10254345-10366022 (Clone quality: bE205D7 on chr=2; Num_of_Contigs=2; )
FAM112A		ENSSSCG00000007367	17:48085867-48086277		CU302397,CH242-82F14,17:48054330-48103577 (Clone quality: bE82F14 on chr=17; Num_of_Contigs=13; )
FAM113A		ENSSSCG00000007168	17:34399079-34403950		CU915714,CH242-485K7,17:34371140-34404136 (Clone quality: bE485K7 on chr=17; Num_of_Contigs=3; )
FAM114A1		ENSSSCG00000008785	8:25753076-25831426		CU694791,CH242-295G5,8:25655285-25835574 (Clone quality: bE295G5 on chr=8; Num_of_Contigs=1; )
FAM114A2		ENSSSCG00000017073	16:66388992-66612233
FAM116A		ENSSSCG00000011467	13:33072574-33128486
FAM117A		ENSSSCG00000017551	12:23224705-23278260
FAM117B		ENSSSCG00000016114	15:99731752-99871405
FAM118A		ENSSSCG00000000014	5:686314-717078
FAM119A		ENSSSCG00000016137	15:103644981-103655071
FAM120A		ENSSSCG00000008079	3:37970880-38058770
FAM120AOS		ENSSSCG00000012333	X:46509527-46509754		CU480790,CH242-209C11,X:46488081-46567944 (Clone quality: bE209C11 on chr=X; Num_of_Contigs=4; )
FAM120C		ENSSSCG00000012330	X:46246310-46367688
FAM122A		ENSSSCG00000005245	1:232515137-232516000		FP236616,CH242-468I7,1:232513563-232516191 (Clone quality: bE468I7 on chr=1; Num_of_Contigs=18; )
FAM122B		ENSSSCG00000012685	X:108705504-108725273
FAM123A		ENSSSCG00000009294	11:2314341-2315207		CU928461,CH242-207A7,11:2314233-2321653 (Clone quality: bE207A7 on chr=11; Num_of_Contigs=13; )
FAM123B		ENSSSCG00000012361	X:49648040-49651366	FP067413,CH242-225C1,X:49628247-49815486 (Clone quality: bE225C1 on chr=13; Num_of_Contigs=4; )
FAM123C		ENSSSCG00000016391	15:133684680-133687275		FP015805,CH242-71G12,15:133674481-133691643 (Clone quality: bE71G12 on chr=15; Num_of_Contigs=5; )
FAM124A		ENSSSCG00000009386	11:16679342-16729532		CU302193,CH242-200H18,11:16672626-16748443 (Clone quality: bE200H18 on chr=11; Num_of_Contigs=7; )
FAM125B		ENSSSCG00000005605	1:281345181-281426111
FAM125B		location ⇒	1:281393178-281393285		CU694275,CH242-31E12,1:281345075-281395229 (Clone quality: bE31E12 on chr=1; Num_of_Contigs=11; )
FAM125B		location ⇒	1:281407291-281407421		CU407269,CH242-474I14,1:281403093-281410784 (Clone quality: bE474I14 on chr=1; Num_of_Contigs=24; )
FAM125B		location ⇒	1:281429302-281429398		CU407269,CH242-474I14,1:281425048-281438277 (Clone quality: bE474I14 on chr=1; Num_of_Contigs=24; )
FAM125B		location ⇒	1:281497800-281497741		CU407269,CH242-474I14,1:281495516-281507508 (Clone quality: bE474I14 on chr=1; Num_of_Contigs=24; )
FAM126A		ENSSSCG00000015386	9:85935030-85951631		FP102348,CH242-188H10,9:85931672-85957896 (Clone quality: bE188H10 on chr=9; Num_of_Contigs=13; )

User Gene List

Genome Location

(Chr.:start-end)

Fell within Finished BACs

(Contig, BACname, Chr.:Start-End)

Fell within Unfinished Clones

(SeqName, Chr.:Start-End)

Symbol

Owner/ Status

Ensembl Gene ID

FAH

ENSSSCG00000001780

7:55053120-55093313

FAH

location ⇒

7:55053122-55053337

CU468492,CH242-383A3,7:54976614-55064573
(Clone quality: bE383A3 on chr=7; Num_of_Contigs=3; )

FAH

location ⇒

7:55060921-55061041

CU468492,CH242-383A3,7:54976614-55064573
(Clone quality: bE383A3 on chr=7; Num_of_Contigs=3; )

FAH

location ⇒

7:55079479-55079611

CU468492,CH242-383A3,7:55064674-55100509
(Clone quality: bE383A3 on chr=7; Num_of_Contigs=3; )

FAH

location ⇒

7:55093086-55093308

CU468492,CH242-383A3,7:55064674-55100509
(Clone quality: bE383A3 on chr=7; Num_of_Contigs=3; )

FAIM2

ENSSSCG00000000206

5:14411877-14437905

FAIM3

ENSSSCG00000015656

9:132076085-132090105

FAM100A

ENSSSCG00000007936

3:33735660-33739965

CU928821,CH242-271C18,3:33718585-33759648
(Clone quality: bE271C18 on chr=3; Num_of_Contigs=7; )

FAM100B

ENSSSCG00000017185

12:3563378-3567425

CU466934,CH242-34E1,12:3420589-3631790
(Clone quality: bE34E1 on chr=9; Num_of_Contigs=4; )

FAM101A

ENSSSCG00000009762

14:28922659-28938318

CT737269,CH242-39H19,14:28857968-28938515
(Clone quality: bE39H19 on chr=14; Num_of_Contigs=4; )

FAM101B

ENSSSCG00000017813

12:45220825-45226667

CU929257,CH242-474H6,12:45207156-45237223
(Clone quality: bE474H6 on chr=12; Num_of_Contigs=7; )

FAM102A

ENSSSCG00000005631

1:282971744-283006323

CU638853,CH242-308I15,1:282900893-283022455
(Clone quality: bE308I15 on chr=1; Num_of_Contigs=4; )

FAM102B

ENSSSCG00000006850

4:116319999-116391969

CU638666,CH242-141A1,4:116312606-116392354
(Clone quality: bE141A1 on chr=4; Num_of_Contigs=4; )

FAM103A1

ENSSSCG00000001803

7:57992167-57997493

CU407315,CH242-258B16,7:57856098-58033288
(Clone quality: bE258B16 on chr=7; Num_of_Contigs=2; )

FAM104A

ENSSSCG00000017247

12:5839731-5857212

CU929672,CH242-62J22,12:5703604-5857364
(Clone quality: bE62J22 on chr=12; Num_of_Contigs=4; )

FAM105A

ENSSSCG00000016782

16:3253976-3282242

CU915557,CH242-338H24,16:3196962-3291207
(Clone quality: bE338H24 on chr=16; Num_of_Contigs=4; )

FAM105B

ENSSSCG00000016783

16:3346962-3416334

FAM106B

ENSSSCG00000017683

12:36001102-36001326

CU928931,CH242-30N5,12:35994200-36016145
(Clone quality: bE30N5 on chr=12; Num_of_Contigs=5; )

FAM107A

ENSSSCG00000011478

13:33910584-33939011

CU927912,CH242-524I3,13:33910046-33973141
(Clone quality: bE524I3 on chr=13; Num_of_Contigs=9; )

FAM107B

location ⇒

10:44998080-44998200

CU929831,CH242-53K15,10:44993340-45064269
(Clone quality: bE53K15 on chr=10; Num_of_Contigs=3; )

FAM107B

location ⇒

10:45000680-45001066

CU929831,CH242-53K15,10:44993340-45064269
(Clone quality: bE53K15 on chr=10; Num_of_Contigs=3; )

FAM108C1

ENSSSCG00000001782

7:55546523-55604020

CU407044,CH242-214H8,7:55528438-55649767
(Clone quality: bE214H8 on chr=7; Num_of_Contigs=5; )

FAM110A

ENSSSCG00000007200

17:36227038-36227925

CU606947,CH242-281M14,17:36222478-36229838
(Clone quality: bE281M14 on chr=17; Num_of_Contigs=11; )

FAM110B

ENSSSCG00000006240

4:77442209-77443324

CU151871,CH242-290E19,4:77372663-77578094
(Clone quality: bE290E19 on chr=4; Num_of_Contigs=5; )

FAM111A

ENSSSCG00000013146

2:10337813-10342895

CU467529,CH242-205D7,2:10254345-10366022
(Clone quality: bE205D7 on chr=2; Num_of_Contigs=2; )

FAM111B

ENSSSCG00000013147

2:10353393-10362442

CU467529,CH242-205D7,2:10254345-10366022
(Clone quality: bE205D7 on chr=2; Num_of_Contigs=2; )

FAM112A

ENSSSCG00000007367

17:48085867-48086277

CU302397,CH242-82F14,17:48054330-48103577
(Clone quality: bE82F14 on chr=17; Num_of_Contigs=13; )

FAM113A

ENSSSCG00000007168

17:34399079-34403950

CU915714,CH242-485K7,17:34371140-34404136
(Clone quality: bE485K7 on chr=17; Num_of_Contigs=3; )

FAM114A1

ENSSSCG00000008785

8:25753076-25831426

CU694791,CH242-295G5,8:25655285-25835574
(Clone quality: bE295G5 on chr=8; Num_of_Contigs=1; )

FAM114A2

ENSSSCG00000017073

16:66388992-66612233

FAM116A

ENSSSCG00000011467

13:33072574-33128486

FAM117A

ENSSSCG00000017551

12:23224705-23278260

FAM117B

ENSSSCG00000016114

15:99731752-99871405

FAM118A

ENSSSCG00000000014

5:686314-717078

FAM119A

ENSSSCG00000016137

15:103644981-103655071

FAM120A

ENSSSCG00000008079

3:37970880-38058770

FAM120AOS

ENSSSCG00000012333

X:46509527-46509754

CU480790,CH242-209C11,X:46488081-46567944
(Clone quality: bE209C11 on chr=X; Num_of_Contigs=4; )

FAM120C

ENSSSCG00000012330

X:46246310-46367688

FAM122A

ENSSSCG00000005245

1:232515137-232516000

FP236616,CH242-468I7,1:232513563-232516191
(Clone quality: bE468I7 on chr=1; Num_of_Contigs=18; )

FAM122B

ENSSSCG00000012685

X:108705504-108725273

FAM123A

ENSSSCG00000009294

11:2314341-2315207

CU928461,CH242-207A7,11:2314233-2321653
(Clone quality: bE207A7 on chr=11; Num_of_Contigs=13; )

FAM123B

ENSSSCG00000012361

X:49648040-49651366

FP067413,CH242-225C1,X:49628247-49815486
(Clone quality: bE225C1 on chr=13; Num_of_Contigs=4; )

FAM123C

ENSSSCG00000016391

15:133684680-133687275

FP015805,CH242-71G12,15:133674481-133691643
(Clone quality: bE71G12 on chr=15; Num_of_Contigs=5; )

FAM124A

ENSSSCG00000009386

11:16679342-16729532

CU302193,CH242-200H18,11:16672626-16748443
(Clone quality: bE200H18 on chr=11; Num_of_Contigs=7; )

FAM125B

ENSSSCG00000005605

1:281345181-281426111

FAM125B

location ⇒

1:281393178-281393285

CU694275,CH242-31E12,1:281345075-281395229
(Clone quality: bE31E12 on chr=1; Num_of_Contigs=11; )

FAM125B

location ⇒

1:281407291-281407421

CU407269,CH242-474I14,1:281403093-281410784
(Clone quality: bE474I14 on chr=1; Num_of_Contigs=24; )

FAM125B

location ⇒

1:281429302-281429398

CU407269,CH242-474I14,1:281425048-281438277
(Clone quality: bE474I14 on chr=1; Num_of_Contigs=24; )

FAM125B

location ⇒

1:281497800-281497741

CU407269,CH242-474I14,1:281495516-281507508
(Clone quality: bE474I14 on chr=1; Num_of_Contigs=24; )

FAM126A

ENSSSCG00000015386

9:85935030-85951631

FP102348,CH242-188H10,9:85931672-85957896
(Clone quality: bE188H10 on chr=9; Num_of_Contigs=13; )

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$version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010

Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
Search results:	Show Finished BAC Show unFinished BAC