A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
HOXD13   ENSSSCG00000015979 15:77003158-77004980   CU570829,CH242-243K13,15:76998439-77017888
(Clone quality: bE243K13 on chr=15; Num_of_Contigs=3; )
HOXD3 ENSSSCG00000015985 15:77078592-77081738   CU570829,CH242-243K13,15:77040738-77185013
(Clone quality: bE243K13 on chr=15; Num_of_Contigs=3; )
HOXD3 location ⇒ 15:77082531-77081818   CU570829,CH242-243K13,15:77040738-77185013
(Clone quality: bE243K13 on chr=15; Num_of_Contigs=3; )
HOXD4 ENSSSCG00000015984 15:77061919-77063519   CU570829,CH242-243K13,15:77040738-77185013
(Clone quality: bE243K13 on chr=15; Num_of_Contigs=3; )
HOXD4 location ⇒ 15:77062706-77062606   CU570829,CH242-243K13,15:77040738-77185013
(Clone quality: bE243K13 on chr=15; Num_of_Contigs=3; )
HOXD4 location ⇒ 15:77063123-77062890   CU570829,CH242-243K13,15:77040738-77185013
(Clone quality: bE243K13 on chr=15; Num_of_Contigs=3; )
HOXD4 location ⇒ 15:77063409-77063165   CU570829,CH242-243K13,15:77040738-77185013
(Clone quality: bE243K13 on chr=15; Num_of_Contigs=3; )
HOXD8   ENSSSCG00000015983 15:77040579-77042083    
HOXD9   ENSSSCG00000015982 15:77033062-77034836   CU570829,CH242-243K13,15:77017989-77040637
(Clone quality: bE243K13 on chr=15; Num_of_Contigs=3; )
HP ENSSSCG00000002753 6:12128324-12139753    
HP ENSSSCG00000003894 6:117760201-117779328   FP102856,CH242-411M18,6:117731449-117792877
(Clone quality: bE411M18 on chr=6; Num_of_Contigs=16; )
HP ENSSSCG00000006970 17:732877-933006    
HP ENSSSCG00000006990 17:5493095-5508600    
HP location ⇒ 6:10791073-10791156   CU914723,CH242-491H10,6:10781997-10802656
(Clone quality: bE491H10 on chr=6; Num_of_Contigs=16; )
HP location ⇒ 6:10791449-10791554   CU914723,CH242-491H10,6:10781997-10802656
(Clone quality: bE491H10 on chr=6; Num_of_Contigs=16; )
HP location ⇒ 6:10792234-10792309   CU914723,CH242-491H10,6:10781997-10802656
(Clone quality: bE491H10 on chr=6; Num_of_Contigs=16; )
HP location ⇒ 6:10793472-10794379   CU914723,CH242-491H10,6:10781997-10802656
(Clone quality: bE491H10 on chr=6; Num_of_Contigs=16; )
HP1BP3   ENSSSCG00000003511 6:54296420-54337582    
HPCAL4   ENSSSCG00000003663 6:65582550-65591840 CR956427,CH242-51O7,6:65474974-65651225
(No clone quality info on bE51O7) 		 
HPD   ENSSSCG00000009805 14:30899552-30911597   CT737291,CH242-160P22,14:30791235-30951915
(Clone quality: bE160P22 on chr=14; Num_of_Contigs=1; )
HPDL   ENSSSCG00000003920 6:118938286-118939401   CU657926,CH242-123A1,6:118924192-118957983
(Clone quality: bE123A1 on chr=6; Num_of_Contigs=4; )
HPGD   ENSSSCG00000009699 14:15243339-15296498    
HPRT1 ENSSSCG00000012683 X:108419935-108456751    
HPRT1 ENSSSCG00000007571 3:1855464-1869309   FP102725,CH242-525I24,3:1850706-1874345
(Clone quality: bE525I24 on chr=3; Note=un_improved;)
HPS3   ENSSSCG00000011699 13:72674278-72708887    
HPS4   ENSSSCG00000009960 14:44792276-44814270   CT841533,CH242-245B12,14:44759242-44823985
(Clone quality: bE245B12 on chr=14; Num_of_Contigs=7; )
HPS5   ENSSSCG00000013368 2:38143860-38182501    
HPS6   ENSSSCG00000010573 14:118061589-118064143   CT737175,CH242-202A24,14:118054044-118086308
(Clone quality: bE202A24 on chr=14; Num_of_Contigs=4; )
HPSE ENSSSCG00000009237 8:116198637-116235950    
HPSE location ⇒ 8:116198723-116198959   CU467102,CH242-443F10,8:116190249-116201230
(Clone quality: bE443F10 on chr=8; Num_of_Contigs=4; )
HPSE location ⇒ 8:116211391-116211537   CU467102,CH242-443F10,8:116201331-116216123
(Clone quality: bE443F10 on chr=8; Num_of_Contigs=4; )
HPSE location ⇒ 8:116213772-116213899   CU467102,CH242-443F10,8:116201331-116216123
(Clone quality: bE443F10 on chr=8; Num_of_Contigs=4; )
HPSE location ⇒ 8:116220152-116220325   CU467102,CH242-443F10,8:116216224-116232355
(Clone quality: bE443F10 on chr=8; Num_of_Contigs=4; )
HPSE2   ENSSSCG00000010535 14:114465553-114709700    
HPT_PIG   ENSSSCG00000002749 6:10789560-10794379   CU914723,CH242-491H10,6:10781997-10802656
(Clone quality: bE491H10 on chr=6; Num_of_Contigs=16; )
HPX ENSSSCG00000014626 9:2597412-2606196   CU972372,CH242-47M8,9:2582658-2612390
(Clone quality: bE47M8 on chr=9; Num_of_Contigs=7; )
HPX ENSSSCG00000010733 14:140668467-140671021   CU468348,CH242-366L11,14:140645129-140680074
(Clone quality: bE366L11 on chr=14; Num_of_Contigs=5; )
HR   ENSSSCG00000009616 14:6342615-6357880    
HRAS ENSSSCG00000013055 2:6945295-6973514    
HRAS ENSSSCG00000011820 13:98453045-98474220   CU915306,CH242-141G19,13:98394942-98496956
(Clone quality: bE141G19 on chr=13; Num_of_Contigs=5; )
HRAS location ⇒ 4:110206691-110206821   CU393558,CH242-266G7,4:110202821-110378185
(Clone quality: bE266G7 on chr=4; Num_of_Contigs=1; )
HRAS location ⇒ 4:110209123-110209304   CU393558,CH242-266G7,4:110202821-110378185
(Clone quality: bE266G7 on chr=4; Num_of_Contigs=1; )
HRAS location ⇒ 4:110211726-110211888   CU393558,CH242-266G7,4:110202821-110378185
(Clone quality: bE266G7 on chr=4; Num_of_Contigs=1; )
HRAS location ⇒ 4:110213790-110213958   CU393558,CH242-266G7,4:110202821-110378185
(Clone quality: bE266G7 on chr=4; Num_of_Contigs=1; )
HRASLS   ENSSSCG00000011820 13:98453045-98474220   CU915306,CH242-141G19,13:98394942-98496956
(Clone quality: bE141G19 on chr=13; Num_of_Contigs=5; )
HRC   ENSSSCG00000003156 6:37830246-37833621   FP102974,CH242-517N5,6:37829677-37837164
(Clone quality: bE517N5 on chr=6; Num_of_Contigs=15; )
HRG ENSSSCG00000015839 15:49861665-49912799    
HRG ENSSSCG00000011801 13:94102798-94113808   CU633961,CH242-82L2,13:94043545-94145850
(Clone quality: bE82L2 on chr=13; Num_of_Contigs=4; )
HRG location ⇒ 13:57237962-57237520   CU656036,CH242-92G17,13:57236763-57241144
(Clone quality: bE92G17 on chr=13; Num_of_Contigs=31; )
HRG location ⇒ 13:57238521-57238209   CU656036,CH242-92G17,13:57236763-57241144
(Clone quality: bE92G17 on chr=13; Num_of_Contigs=31; )
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-32

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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