A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Search results:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
gp150 ENSSSCG00000017204 12:4001967-4036159    
GP1BA ENSSSCG00000017908 12:49171930-49173813   FP015831,CH242-271O18,12:49169208-49243291
(Clone quality: bE271O18 on chr=12; Num_of_Contigs=4; )
GP1BA location ⇒ 2:4989256-4989369   CU856129,CH242-95H3,2:4988912-5001366
(Clone quality: bE95H3 on chr=2; Num_of_Contigs=5; )
GP1BA location ⇒ 2:4989461-4989563   CU856129,CH242-95H3,2:4988912-5001366
(Clone quality: bE95H3 on chr=2; Num_of_Contigs=5; )
GP1BB ENSSSCG00000010127 14:52410111-52411258   CU468497,CH242-430C1,14:52380763-52419017
(Clone quality: bE430C1 on chr=14; Num_of_Contigs=6; )
GP1BB location ⇒ 14:52410529-52410111   CU468497,CH242-430C1,14:52380763-52419017
(Clone quality: bE430C1 on chr=14; Num_of_Contigs=6; )
GP1BB location ⇒ 14:52410920-52410604   CU468497,CH242-430C1,14:52380763-52419017
(Clone quality: bE430C1 on chr=14; Num_of_Contigs=6; )
GP1BB location ⇒ 14:52517754-52517836    
GP1BB location ⇒ 14:52518047-52518465   CT737290,CH242-153A5,14:52517937-52547544
(Clone quality: bE153A5 on chr=14; Num_of_Contigs=5; )
GP2   ENSSSCG00000007861 3:23106417-23126403   CU929688,CH242-143L18,3:23105964-23155638
(Clone quality: bE143L18 on chr=3; Num_of_Contigs=8; )
GP40 ENSSSCG00000003451 6:50299906-50308519   FP236409,CH242-139N22,6:50299882-50316412
(Clone quality: bE139N22 on chr=6; Num_of_Contigs=12; )
GP5 ENSSSCG00000011824 13:98944880-98946583   CU928370,CH242-309K5,13:98935619-99004797
(Clone quality: bE309K5 on chr=13; Num_of_Contigs=6; )
GP6   ENSSSCG00000003276 6:40800192-40818401 CR853303,PigE-173F2,6:40799672-40950930
(No clone quality info on bT173F2) 		 
GP9   location ⇒ 13:11197889-11197911   CU914652,CH242-264G4,13:11196382-11231963
(Clone quality: bE264G4 on chr=13; Num_of_Contigs=9; )
GPA33   ENSSSCG00000006312 4:87208388-87248911    
GPAM ENSSSCG00000010631 14:128153932-128222700    
GPAM location ⇒ 14:128150856-128150787   CT827870,CH242-255O14,14:127975390-128169999
(Clone quality: bE255O14 on chr=14; Num_of_Contigs=1; )
GPAM location ⇒ 14:128152488-128152225   CT827870,CH242-255O14,14:127975390-128169999
(Clone quality: bE255O14 on chr=14; Num_of_Contigs=1; )
GPAM location ⇒ 14:128161759-128161493   CT827870,CH242-255O14,14:127975390-128169999
(Clone quality: bE255O14 on chr=14; Num_of_Contigs=1; )
GPAM location ⇒ 14:128162848-128162779   CT827870,CH242-255O14,14:127975390-128169999
(Clone quality: bE255O14 on chr=14; Num_of_Contigs=1; )
GPAT2   ENSSSCG00000008121 3:41617048-41618751   CU928101,CH242-269H20,3:41612968-41620386
(Clone quality: bE269H20 on chr=3; Num_of_Contigs=12; )
GPATCH1   ENSSSCG00000002865 6:28728904-28743412   CU638683,CH242-3F10,6:28722049-28743707
(Clone quality: bE3F10 on chr=6; Num_of_Contigs=8; )
GPATCH2   ENSSSCG00000010815 10:7664976-7866423    
GPATCH3   ENSSSCG00000003564 6:57878383-57887202   FP015947,CH242-485K18,6:57822585-57995160
(Clone quality: bE485K18 on chr=6; Num_of_Contigs=2; )
GPATCH4   ENSSSCG00000006481 4:97333001-97339005   CU633176,CH242-238D11,4:97318135-97342444
(Clone quality: bE238D11 on chr=4; Num_of_Contigs=11; )
GPATCH8   ENSSSCG00000017354 12:16786785-16788311   CU468984,CH242-216D12,12:16784918-16788615
(Clone quality: bE216D12 on chr=12; Num_of_Contigs=22; )
GPBP1L1 ENSSSCG00000000608 5:55031052-55032746   CU463008,CH242-511E2,5:55026707-55063558
(Clone quality: bE511E2 on chr=5; Num_of_Contigs=3; )
GPBP1L1 location ⇒ 5:55031064-55031844   CU463008,CH242-511E2,5:55026707-55063558
(Clone quality: bE511E2 on chr=5; Num_of_Contigs=3; )
GPBP1L1 location ⇒ 5:55032111-55032932   CU463008,CH242-511E2,5:55026707-55063558
(Clone quality: bE511E2 on chr=5; Num_of_Contigs=3; )
GPBP1L1 location ⇒ 5:55033058-55033241   CU463008,CH242-511E2,5:55026707-55063558
(Clone quality: bE511E2 on chr=5; Num_of_Contigs=3; )
GPBP1L1 location ⇒ 5:55033291-55033499   CU463008,CH242-511E2,5:55026707-55063558
(Clone quality: bE511E2 on chr=5; Num_of_Contigs=3; )
GPC1   ENSSSCG00000016364 15:131637092-131643002    
GPC2   ENSSSCG00000007649 3:6419612-6425760   CU694680,CH242-187A15,3:6349164-6471889
(Clone quality: bE187A15 on chr=3; Num_of_Contigs=2; )
GPC3 ENSSSCG00000012680 X:107562856-108038201    
GPC4   ENSSSCG00000012679 X:107281331-107319310    
GPC6   ENSSSCG00000009489 11:64110166-64130532    
GPCPD1-203   ENSSSCG00000007043 17:13576908-13629493    
GPD1   ENSSSCG00000000214 5:14628627-14630599   CU457393,CH242-123B14,5:14626858-14630619
(Clone quality: bE123B14 on chr=5; Num_of_Contigs=20; )
GPD1L   ENSSSCG00000004243 1:44341710-44342765   CU062544,CH242-25F22,1:44312826-44360882
(Clone quality: bE25F22 on chr=1; Num_of_Contigs=7; )
GPD2 ENSSSCG00000015872 15:59552649-59577953    
GPD2 location ⇒ 15:59552654-59552850   FP089565,CH242-197D20,15:59548281-59565851
(Clone quality: bE197D20 on chr=15; Num_of_Contigs=9; )
GPD2 location ⇒ 15:59577297-59577495   FP089565,CH242-197D20,15:59565952-59591038
(Clone quality: bE197D20 on chr=15; Num_of_Contigs=9; )
GPD2 location ⇒ 15:59577997-59578274   FP089565,CH242-197D20,15:59565952-59591038
(Clone quality: bE197D20 on chr=15; Num_of_Contigs=9; )
GPD2 location ⇒ 15:59579500-59580756   FP089565,CH242-197D20,15:59565952-59591038
(Clone quality: bE197D20 on chr=15; Num_of_Contigs=9; )
GPHA2   ENSSSCG00000013015 2:5646978-5647633   CU606982,CH242-431G15,2:5575891-5703518
(Clone quality: bE431G15 on chr=2; Num_of_Contigs=4; )
GPHB5   ENSSSCG00000005116 1:203784756-203789713   CU468564,CH242-244O8,1:203775574-203792441
(Clone quality: bE244O8 on chr=1; Num_of_Contigs=15; )
GPHN   ENSSSCG00000002285 7:99057402-99304599    
GPI location ⇒ 6:29418959-29418805   CU929776,CH242-347I7,6:29417870-29447644
(Clone quality: bE347I7 on chr=6; Num_of_Contigs=4; )
GPI location ⇒ 6:29433719-29433572   CU929776,CH242-347I7,6:29417870-29447644
(Clone quality: bE347I7 on chr=6; Num_of_Contigs=4; )
GPI location ⇒ 6:29444925-29444783   CU929776,CH242-347I7,6:29417870-29447644
(Clone quality: bE347I7 on chr=6; Num_of_Contigs=4; )
Go to records:
1-49, 50-100, 101-150, 151-200, 201-250, 251-300, 301-350, 351-400, 401-450, 451-500, 501-550, 551-600, 601-650, 651-700, 701-750, 751-800, 801-850, 851-25

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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