From listmaster animalgenome.org Wed Feb 20 07:36:33 2019
Return-Path: <listmasteranimalgenome.org>
From: Andres Legarra-Albizu <andres.legarrainra.fr>
Postmaster: submission approved by list moderator
To: Members of AnGenMap <angenmapanimalgenome.org>
Subject: software for exact p-values for association analysis
on single step gblup
Date: Wed, 20 Feb 2019 07:36:33 -0600
Dear all,
thanks to collaborative work and extensive programming, I, on behalf of all
the blupf90 team, am happy to announce that the blupf90 suite now computes
exact p-values for gwas analysis - same as “one at a time” classical
gwas by regression. The authoritative reference is this biorxiv deposit:
MS ID#: BIORXIV/2019/555243
MS TITLE: Exact p-values for large-scale single step genome-wide
association, with an application for birth weight in American Angus
These requires the use of OPTION snp_p_value in programs blupf90 (or
blupf90test) and postGSf90. More details in the corresponding sections in
the wiki:
http://nce.ads.uga.edu/...application_programs
regards, Andres
--
Andres Legarra
+33 561285182
INRA, UMR1388 GenPhySE
CS 52627
31326 Castanet Tolosan, France
http://genoweb.toulouse.inra.fr/~alegarra
|
