From luciana cppse.embrapa.br Fri Sep 15 09:38:27 2006
Date: Fri, 15 Sep 2006 11:38:14 -0300
From: Luciana Correia de Almeida Regitano <lucianacppse.embrapa.br>
Subject: Re: Pedigree drawing software
To: Multiple Recipients of <angenmapanimalgenome.org>
Dear Group,
I know that Phase can do that. I am not very sure of what pedigree
complexity it can handle but it works fine for half-sibs families.
Regards,
Luciana
--
Luciana Correia de Almeida Regitano, PhD
Genetica Molecular Animal
Embrapa Pecuaria Sudeste
Sao Carlos - Sao Paulo
Rodovia Washington Luiz, km 234
Caixa Postal 339 CEP 13560-970
Fone: (016) 3361-5611
Fax: (016) 3361-5754
Karen Fullard escreveu:
> Dear Group,
>
> On the subject of software packages...
>
> Could anyone point me in the direction of a package which can infer unknown
> dam genotypes, given known sire genotypes, and a small number of known
> offspring genotypes per dam.
>
> Presumably a calculation of population allele frequencies would be
> necessary.
>
> I am using codominant markers, and the population is diploid.
>
> I have had a look on the web, and asked around locally, and was surprised
> that nothing obvious was available. If anyone knows of free software out
> there that would run on Windows, I would be very grateful...
>
> Regards, Karen Fullard
>
> At 03:31 PM 14/09/2006, Steve Kemp wrote:
>
>> Dear Group
>>
>> I would be grateful for recommendations on suitable software for simple
>> pedigree drawing/haplotype display.
>>
>> I need to visualise cattle pedigrees typed with a few hundred
>> microsatellites and show haplotype structure. In the near future I will want
>> to do the same thing with SNP-based data. I have used Cyrillic in the past
>> and it more-or-less does what I want, but I have not had to do this for a
>> long time and I am sure the state-of-the art has moved on.
>>
>> Added bonus for software that runs on Mac OSX and/or is free!
>>
>> Thanks
>>
>> Steve
>>
>> ------------------------------------------
>> Prof S J Kemp School of Biological Sciences Biosciences Building Liverpool
>> L69 7ZB UK
>> and
>> ILRI P.O. Box 30709, Nairobi, 00100 Kenya
>> kempsjliv.ac.uk
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