SNP Plot::GFF Formattor

This GFF Formattor tool can be used to generate a GFF file for you from a list of SNP IDs you provide. The generated GFF file can be used to upload directly into a GBrowse for your analysis.

Upload your SNP id file:

The file must contain a single column of SNP names or IDs.

This tool searches the database for genome locations (chromosomes, coordinates, etc) of your SNPs and output the resulting data in GFF3 format that can be loaded into a GBrowse to display as a new track.

Choose:

  1. SNP id type:
    Gensel ID
    Illumina ID
  2. SNP dataset to use:
    bovBtau4_50k
    bovBtau4_54k
    bovBtau4_770k
    bovUMD3_54k
    bovUMD3_770k
    Btau_4.2_rs
    Equine_54k
    Equine_74k
    ssc.v9_64k
    UMD_3.1_rs
  3. Purpose:
    GBrowse-ready format
    Just GFF3 format

Next:

Save the returned data in your web browser as a plain text file; which can subsequently be uploaded directly into a GBrowse as a user added track.

$Id: snplotz v.1.52 beta Mar 2011

 

© 2003-2025: USA · USDA · NRPSP8 · Program to Accelerate Animal Genomics Applications. Contact: Bioinformatics Team