SNP Chip Consortium

Public raw SNP data compiled for a Pig SNP Chip

Raw data source: NCBI/dbSNP
Scores: Range: 25-125. An indicator of the sequence quality in terms of (1) the number of variable nucleiotide in the flanking sequences (higher number of variable NT negatively contributes to the score); (2) the length of the flanking sequences (if shorter than 60 bp, negatively contributes to the score).
Consortium contact: Max Rothschild, Martien Groenen
Technical Contact: Zhiliang Hu about this data set.
Date: May 21, 2008

Records 8401 - 8427:

SNP id	Position	Length	Taxonomy	Molecule	Class	Build	Flanking Sequence - Left	Alleles	Flanking Sequence - Right	Scores
rs55620959	188	400	9823	genomic	1	128	GCAGGGCCCCCGGTGTCCTTGGTGGCACTG TGCGCCCTCGCCGCTCGCCCCTGGGACTGG	C/T	ACGGCAGACAGGACAGCACCCAGGGGAGTC AAGGGCACTGACGAGACCAGACTAGGCGAG	120
rs55620960	224	539	9823	genomic	1	128	TCTTTCCTCTCCTTTGCTCAGAAGACTCGG GGCATCCAGGACTCTGTGTCCCCGTCCTTC	C/T	TGAATTAATTTGCACTAAGTCGTTTGCACT GGTTTGGAGTCCTGGAACCAGCCCCGGGTC	120
rs55620938	61	120	9823	genomic	1	128	CCCTTTTTCTCCTGTCTCTCAACCTTAGAG ATGCCGAAGTTATCAGTACTTTAGTGACGA	C/G	TAGGGGATGGGTGTAGAGCCAGACCGGATT CCTGGGTCTCCCTTCTGCGTGCCAATTCC	119
rs55620953	62	120	9823	genomic	1	128	AGCCCTCCTGCGGTCAGCGGGCTCCAGCGA CCACCAGCTTGACCTTCTCCTCCCAACGCC	C/T	GCTTTGTGCCAGCCCCCCTATCCACTCGCT CCAGTCTCTGAAGCCCCCAACAGGCCAA	118
rs55620949	64	120	9823	genomic	1	128	GGATTGAAACATGTTCCTTAACTGAAAAGG TATATGAAAGATAAATTGTGAACACAAGAA	C/T	GTAACTTGACGTTTTTAATTTTCAAGCATA AAATATGCGCACATGTATGATGAATC	116
rs55620934	57	110	9823	genomic	1	128	GGATTGGGCCCTGGCCAGGAGGAGGCTGCT GGGGGGATGCTCAGACCAGCTGGAGG	C/T	GGGAGGCCAGCGGGTCTGTGGGGGCTGTTT GGCTCGGCACTTGGCTGCTCTGG	109
rs55620935	56	110	9823	genomic	1	128	GGAGGCTGCTGGGGGGATGCTCAGACCAGC TGGAGGTGGGAGGCCAGCGGGTCTG	C/T	GGGGGCTGTTTGGCTCGGCACTTGGCTGCT CTGGCCCCTCTGCACCCAGTGGGA	109
rs55620937	57	110	9823	genomic	1	128	AGTGCCAGGAGACTGGGTGTGGAGGGCTCC AGCACAGTGGCAGTTCTCTGAGAGTC	A/G	TTGTCCTTCTTTGCAGATGCCCCCAAGCTG CAGGGCCCTGTGGCTGTGTACAC	109
rs55620941	56	110	9823	genomic	1	128	GGTGTAGAGCCAGACCGGATTCCTGGGTCT CCCTTCTGCGTGCCAATTCCACCTG	A/T	GCCACATTTGAAGCCCAAAATGATGGGAGA ATGCCACATTCAGAGAGGAGATCT	109
rs55620942	56	110	9823	genomic	1	128	CATTTGAAGCCCAAAATGATGGGAGAATGC CACATTCAGAGAGGAGATCTGCCCT	C/T	TCCTAGCCGCCCCCCTTGCTTTGTCTCACA TGTTCTCATTTCTGCTAGGTAGGG	109
rs55620943	54	110	9823	genomic	1	128	GCCTCTGCAGTGGTCCAGATCAAGAACTGG GGAGAGGCACAATGACTGGACAG	C/T	GTGGGGTTTCCTTCTTGCCTCCCTACTCTC TCCTCTCACTTCCGAGGCTGTGCCTA	109
rs55620944	57	110	9823	genomic	1	128	AATGACTGGACAGCGTGGGGTTTCCTTCTT GCCTCCCTACTCTCTCCTCTCACTTC	C/T	GAGGCTGTGCCTATTGAAGGGTCAGGCCCA GGAGAGTAGGGCTCCAGTTCCTC	109
rs55620950	55	110	9823	genomic	1	128	ACGGCGTGGAGGAAAGACTTCCCGGCTGGG CCTTTCGTTTCACCTCCGGATGTC	A/G	GAATACTCAGACTGTTCATCCTCCCACTCG CTGCTTCCAGAAGTTCCCTGGGCCC	109
rs55620952	56	110	9823	genomic	1	128	CAGGCCTGCCCCCTGGGGCAGACAAGGCCC GCAGAGCCCTCCCCTAAGGTAGAGA	C/T	GGAGAGGGCTCCCCAAAGTCCAGAGTCCAG CCTGCAGCCCTCCTGCGGTCAGCG	109
rs55620954	60	110	9823	genomic	1	128	AGCAAGAGGACTTAATTTAACCTAACTTTC ACTGTGCCACTGAGTATTGCTATCTACTG	G/T	TTCACTGTCATAGTTGAAGCTGCAAAGTTG ATGCTTTTTGTATACCTTTT	109
rs55620957	60	110	9823	genomic	1	128	ACTAGGTGCGTTTTTCAAGTGATGTTGATT GGATGCTAGTGTACCAGCCAGCTCTTCCT	C/T	TTTTAGGACGATGACAATCTAGTCTATTCA CATGTTAGTCACTTAGAAGT	109
rs55620958	61	110	9823	genomic	1	128	TTATCACCCAAAGCAGCACATTTGGAGAGT GAAAGGGGAGATATTAAATCTTTAAGCCAG	A/G	ACAAGGGGGCCAAATGGACTGTCCATGATA AAGTGGGATGTATGGTTAC	109
rs55620955	56	102	9823	genomic	1	128	CTACCCTCCCATAGCTACCCAAGAGCCACC CACCTCTCGCGGGGGGGTCTCAGAT	A/C	TCCCTCCCTCCCCATCCAGGCTGAGACATG CCCATCAGCAGGCAGC	101
rs55620956	61	102	9823	genomic	1	128	CTACCCTCCCATAGCTACCCAAGAGCCACC CACCTCTCGCGGGGGGGTCTCAGATCTCCC	C/T	CCCTCCCCATCCAGGCTGAGACATGCCCAT CAGCAGGCAGC	101
rs55620936	53	100	9823	genomic	1	128	TCTTTGTGGCACTGGCCATCAGCTCTCAGT CTAAGTTGTGTGGTACTCTGGC	A/G	CCAACTCATTTCCTCAAACCCAATCCCTCC CCAGGGCCAGGAGAGAT	99
rs55620939	49	100	9823	genomic	1	128	CTAGGGGATGGGTGTAGAGCCAGACCGGAT TCCTGGGTCTCCCTTCTG	C/T	GTGCCAATTCCACCTGTGCCACATTTGAAG CCCAAAATGATGGGAGAATGC	99
rs55620940	55	100	9823	genomic	1	128	CTAGGGGATGGGTGTAGAGCCAGACCGGAT TCCTGGGTCTCCCTTCTGCGTGCC	A/G	ATTCCACCTGTGCCACATTTGAAGCCCAAA ATGATGGGAGAATGC	99
rs55620947	56	100	9823	genomic	1	128	GGATGAAGATAATACTTGAAGCTTTGAGAC AGGCTGAAAATGAGCCCCAGTCTTC	A/G	CTGAAAGAAAACAAGCCCTATACTTTGAAT TCAGAAAAGAACTT	99
rs55620948	47	100	9823	genomic	1	128	AAAATAGTTACTCATACCTGGTTCCCCTCA ATGCTAGGATTTCGGA	C/T	TAGGAGTTCTTTTAATGTGGAAAGAAAAGC AGACTCTGCTTGCTGGTCATTAG	99
rs55620951	49	100	9823	genomic	1	128	TGCTTATCTCTTCCTGTTGGCCTTGGTGGA GTGGTTCTCAAAGGAGGG	A/G	TTCCTGGTATGGGTGGATCATGATGTTTGA AGGGCAGGAGCATCAGTGGAG	99
rs55620946	54	79	9823	genomic	1	128	CCTAGGAGTTTAGTTGAGGGCTGAAGGGGT TAATGGAAGTTTCCTAATGAAAC	A/G	TGACACCCTCCATGTTGCTACAAAA	78
rs55620945	55	71	9823	genomic	1	128	CTCACCGGCAAGGCCAGCCACACAGCGGTG AGTGTCCCTGCGCAGCCCGGCTGT	C/T	CCCGCTGCTGCCTGCC	70

27 Rows queried.

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