| QTL Map Information |
|---|
| Chromosome: | 10 |
| QTL Peak Location: | 54.83 (cM) |
| QTL Span: | 54.83-54.83 (cM)
30.0-30.0 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs81423166 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 1.56E-6 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were wild boar. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Illumina PorcineSNP60 BeadChip and analyzed for tuberculosis incidence. |
| Analysis: | Two GWAS were conducted: 1) infected vs. uninfected individuals; and 2) individuals from the lowest vs the highest periods of TB prevalence (2002/06 vs. 2009/12). |
| Software: | PLINK |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Queirós J, Alves PC, Vicente J, Gortázar C, de la Fuente J |
| Affiliation: | Department of Veterinary Pathobiology, Center for Veterinary Health Sciences, Oklahoma State University, Stillwater, OK, 74078, USA |
| Title: | Genome-wide associations identify novel candidate loci associated with genetic susceptibility to tuberculosis in wild boar |
| Journal: | Scientific reports, 2018, 8(1): 1980 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | uninfected vs. infected |
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