Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of semen quality traits:
14
Number of QTL / associations found:
1,275
Number of chromosomes where QTL / associations are found:
18
Chi-squared (χ2) test: are semen quality traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome 1
1058.07604
17
3.363983e-214
6.055169e-213
Chromosome 2
62.85720
17
3.521724e-07
4.226069e-07
Chromosome 3
164.31604
17
3.740347e-26
6.120568e-26
Chromosome 4
226.24546
17
1.430075e-38
2.860150e-38
Chromosome 5
164.31604
17
3.740347e-26
6.120568e-26
Chromosome 6
85.78430
17
3.538777e-11
4.899845e-11
Chromosome 7
26645.06908
17
9e-41
2.025000e-40
Chromosome 8
142.31140
17
7.75259e-22
1.162889e-21
Chromosome 9
37.82198
17
0.002600013
2.925015e-03
Chromosome 10
239.81720
17
2.490795e-41
6.404901e-41
Chromosome 11
594.26430
17
2.334207e-115
1.400524e-114
Chromosome 12
379.75140
17
3.138797e-70
1.412459e-69
Chromosome 13
80.38198
17
3.280292e-10
4.217518e-10
Chromosome 14
23.19604
17
0.1429767
1.513871e-01
Chromosome 15
12.12778
17
0.7923386
7.923386e-01
Chromosome 16
268.14662
17
4.030649e-47
1.209195e-46
Chromosome 17
268.14662
17
4.030649e-47
1.209195e-46
Chromosome 18
805.35140
17
3.298234e-160
2.968411e-159
Chi-squared (χ2) test: Which of the 14 semen quality traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Number of functional sperm
108.38091
13
3.874858e-17
1.356200e-16
Plasma droplet rate
31.41667
13
0.002929159
3.154479e-03
Semen color
61.58722
13
2.7281e-08
4.774175e-08
Semen odor
50.68881
13
2.270159e-06
3.178223e-06
Semen pH
31.0244
13
0.003344033
3.344033e-03
Semen volume
223.72633
13
1.772936e-40
1.241055e-39
Sperm abnormality rate
123.45958
13
4.162901e-20
1.942687e-19
Sperm acrosome integrity rate
68.83332
13
1.315295e-09
3.069022e-09
Sperm concentration
63.74342
13
1.114092e-08
2.228184e-08
Sperm count
56.75071
13
1.986772e-07
3.090534e-07
Sperm motility
488.07888
13
4.973781e-96
6.963293e-95
Sperm per ejaculate
34.0003
13
0.001203432
1.404004e-03
Sperm progressive motility
86.73591
13
5.862359e-13
1.641461e-12
Sperm straight-line velocity
43.95206
13
3.125562e-05
3.977988e-05
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
18
χ2
=
31257.980880
Number of traits:
14
df
=
221
Number of QTLs:
1,275
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
