Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of meat quality traits:
8
Number of QTL / associations found:
1,343
Number of chromosomes where QTL / associations are found:
23
Chi-squared (χ2) test: are meat quality traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome 1
136.88472
22
1.370007e-18
1.853539e-18
Chromosome 3
12.08352
22
0.9556302
9.983293e-01
Chromosome 4
323.72016
22
1.837407e-55
7.043394e-55
Chromosome 5
145.68296
22
3.107735e-20
4.467369e-20
Chromosome 6
0.05080
22
0.998329325823115
9.983293e-01
Chromosome 7
454.69264
22
1.955729e-82
1.499392e-81
Chromosome 8
1149.78120
22
2.354404e-229
5.415129e-228
Chromosome 9
41.43872
22
0.007304276
7.999921e-03
Chromosome 10
104.43200
22
1.074431e-12
1.372884e-12
Chromosome 11
152.75960
22
1.441076e-21
2.367482e-21
Chromosome 12
152.75960
22
1.441076e-21
2.367482e-21
Chromosome 13
82.96960
22
5.227032e-09
6.327460e-09
Chromosome 14
223.52064
22
2.670065e-35
6.141150e-35
Chromosome 15
282.28456
22
4.689871e-47
1.348338e-46
Chromosome 16
269.98376
22
1.41331e-44
3.611792e-44
Chromosome 17
294.85936
22
1.344212e-49
4.416697e-49
Chromosome 19
762.64200
22
4.560873e-147
5.245004e-146
Chromosome 20
347.89888
22
2.112219e-60
9.716207e-60
Chromosome 24
420.36352
22
2.549599e-75
1.466019e-74
Chromosome 25
162.04632
22
2.481949e-23
4.757069e-23
Chromosome 27
145.68296
22
3.107735e-20
4.467369e-20
Chromosome 28
171.60696
22
3.66767e-25
7.668765e-25
Chromosome 29
76.36352
22
6.361659e-08
7.315908e-08
Chi-squared (χ2) test: Which of the 8 meat quality traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Fillet color lightness
261.65044
7
9.1579e-53
1.046617e-52
Fillet color redness
601.15338
7
1.374451e-125
2.748902e-125
Fillet color whiteness
235.55471
7
3.275370e-47
3.275370e-47
Fillet color yellowness
709.07441
7
7.622389e-149
6.097911e-148
Intramuscular fat content
313.49409
7
7.924702e-64
1.056627e-63
Muscle moisture content
597.4003
7
8.837377e-125
1.413980e-124
Muscle protein content
617.13106
7
4.977449e-129
1.327320e-128
Shear force
635.49203
7
5.516997e-133
2.206799e-132
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
23
χ2
=
5914.508000
Number of traits:
8
df
=
154
Number of QTLs:
1,343
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
