Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of milk production & yield traits:
2
Number of QTL / associations found:
267
Number of chromosomes where QTL / associations are found:
27
Chi-squared (χ2) test: are milk production & yield traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
0.15980
26
0.998329325823115
0.999998300
Chromosome 1
13.30586
26
0.9810619
0.999998300
Chromosome 2
16.78902
26
0.9153184
0.999998300
Chromosome 3
59.21598
26
0.0002135644
0.005766239
Chromosome 4
3.41822
26
0.998329325823115
0.999998300
Chromosome 5
52.49688
26
0.001563598
0.021108573
Chromosome 6
0.90138
26
0.998329325823115
0.999998300
Chromosome 7
13.30586
26
0.9810619
0.999998300
Chromosome 8
3.05868
26
0.998329325823115
0.999998300
Chromosome 9
0.00250
26
0.998329325823115
0.999998300
Chromosome 10
3.05868
26
0.998329325823115
0.999998300
Chromosome 11
0.00250
26
0.998329325823115
0.999998300
Chromosome 12
3.05868
26
0.998329325823115
0.999998300
Chromosome 13
0.24968
26
0.998329325823115
0.999998300
Chromosome 14
0.15980
26
0.998329325823115
0.999998300
Chromosome 15
4.83396
26
0.9999983
0.999998300
Chromosome 16
0.72160
26
0.998329325823115
0.999998300
Chromosome 17
7.01374
26
0.9999226
0.999998300
Chromosome 18
0.00250
26
0.998329325823115
0.999998300
Chromosome 19
3.05868
26
0.998329325823115
0.999998300
Chromosome 20
3.05868
26
0.998329325823115
0.999998300
Chromosome 21
3.05868
26
0.998329325823115
0.999998300
Chromosome 22
9.59800
26
0.998581
0.999998300
Chromosome 23
0.15980
26
0.998329325823115
0.999998300
Chromosome 24
7.01374
26
0.9999226
0.999998300
Chromosome 25
12.58676
26
0.987351
0.999998300
Chromosome 26
9.59800
26
0.998581
0.999998300
Chi-squared (χ2) test: Which of the 2 milk production & yield traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Milk yield
0.21929
1
0.6395814
0.6395814000
Milk yield persistency
14.41806
1
0.0001463916
0.0002927832
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
27
χ2
=
229.887660
Number of traits:
2
df
=
26
Number of QTLs:
267
p-value
=
1.490816e-34
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
