Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of growth traits:
16
Number of QTL / associations found:
1,278
Number of chromosomes where QTL / associations are found:
27
Chi-squared (χ2) test: are growth traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome X
139.75584
26
1.529263e-17
2.580631e-17
Chromosome 1
2310.00944
26
9e-41
3.471429e-40
Chromosome 2
383.13616
26
3.455533e-65
9.329939e-64
Chromosome 3
3029.33328
26
9e-41
3.471429e-40
Chromosome 4
200.15024
26
8.247499e-29
1.590589e-28
Chromosome 5
113.61504
26
6.337836e-13
1.006597e-12
Chromosome 6
5509.44608
26
9e-41
3.471429e-40
Chromosome 7
258.74176
26
3.300252e-40
1.113835e-39
Chromosome 8
19.86848
26
0.7977479
8.974664e-01
Chromosome 9
79.47424
26
2.525853e-07
3.409902e-07
Chromosome 10
168.60096
26
7.657973e-23
1.378435e-22
Chromosome 11
2.40368
26
0.998329325823115
9.983293e-01
Chromosome 12
23.47424
26
0.6060011
7.113926e-01
Chromosome 13
101.55872
26
7.055983e-11
1.058397e-10
Chromosome 14
69.44608
26
7.985571e-06
9.800473e-06
Chromosome 15
234.40368
26
1.964328e-35
4.079758e-35
Chromosome 16
234.40368
26
1.964328e-35
4.079758e-35
Chromosome 17
72.71360
26
2.650185e-06
3.407381e-06
Chromosome 18
18.17840
26
0.8691866
9.387215e-01
Chromosome 19
0.60096
26
0.998329325823115
9.983293e-01
Chromosome 20
311.02352
26
1.310838e-50
8.848157e-50
Chromosome 21
252.54464
26
5.482326e-39
1.480228e-38
Chromosome 22
311.02352
26
1.310838e-50
8.848157e-50
Chromosome 23
252.54464
26
5.482326e-39
1.480228e-38
Chromosome 24
79.47424
26
2.525853e-07
3.409902e-07
Chromosome 25
353.38960
26
3.794249e-59
5.122236e-58
Chromosome 26
234.40368
26
1.964328e-35
4.079758e-35
Chi-squared (χ2) test: Which of the 16 growth traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Age at maximum daily gain
39.3981
15
0.000558673
7.448973e-04
Average daily gain
67.1221
15
1.446698e-08
3.857861e-08
Body circumference
96.36203
15
6.356386e-14
1.017022e-12
Body depth
53.94454
15
2.683476e-06
4.293562e-06
Body height
59.19451
15
3.467375e-07
6.164222e-07
Body length
52.81765
15
4.134633e-06
6.014012e-06
Body weight
59.76206
15
2.771054e-07
5.542108e-07
Body weight change
32.00003
15
0.006438087
6.867293e-03
Body width
64.31767
15
4.498522e-08
1.028234e-07
Hip width
33.94372
15
0.003467864
3.963273e-03
Maximum daily gain
74.17646
15
7.972127e-10
3.188851e-09
Shin circumference
84.63935
15
9.807261e-12
5.230539e-11
Tail length
36.15448
15
0.001679293
2.066822e-03
Tail size
29.55553
15
0.01362908
1.362908e-02
Total bone
94.66089
15
1.328875e-13
1.063100e-12
bone density
67.59495
15
1.193563e-08
3.819402e-08
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
27
χ2
=
14763.718400
Number of traits:
16
df
=
390
Number of QTLs:
1,278
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
