Authors: Pampouille E, Berri C, Boitard S, Hennequet-Antier C, Beauclercq SA, Godet E, Praud C, Jégo Y, Le Bihan-Duval E
(Contact: elisabeth.duval@inra.fr ) Affiliation: BOA, INRA, Université de Tours, 37380, Nouzilly, France Title: Mapping QTL for white striping in relation to breast muscle yield and meat quality traits in broiler chickens Journal: BMC Genomics, 19(1): 202 (2018)
DOI :
10.1186/s12864-018-4598-9 Links:
PubMed | Abstract
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( Related study: none )
Click on each trait to browse further along the related trait ontology tree
Click on each chromosome number to find the detailed QTL information on that chromosome
Number of QTL/association reported by traits:
QTL for Meat color
Chr.1 : Asso:154241 , Asso:154242 , Asso:154244 . Chr.4 : Asso:154253 , Asso:154254 , Asso:154257 , Asso:154258 . Chr.12 : Asso:154268 , Asso:154269 . Chr.14 : Asso:154270 . Chr.24 : Asso:154276 . Chr.25 : Asso:154277 , Asso:154278 , Asso:154279 . Chr.27 : Asso:154280 .
QTL for White striping
Chr.1 : Asso:154243 , Asso:154282 , Asso:154283 , Asso:154284 , Asso:154285 , Asso:154286 . Chr.17 : Asso:154271 . Chr.18 : Asso:154272 . Chr.20 : Asso:154287 .
QTL for Pectoralis major percent
Chr.4 : Asso:154245 . Chr.5 : Asso:154261 . Chr.8 : Asso:154267 .
QTL for Cooking loss
Chr.4 : Asso:154246 , Asso:154247 , Asso:154248 , Asso:154249 , Asso:154250 , Asso:154251 , Asso:154255 , Asso:154259 . Chr.5 : Asso:154264 .
QTL for Drip loss
Chr.4 : Asso:154252 , Asso:154256 , Asso:154260 . Chr.5 : Asso:154262 , Asso:154263 . Chr.24 : Asso:154275 .
QTL for Pectoralis minor percent
Chr.5 : Asso:154265 . Chr.19 : Asso:154273 , Asso:154274 .
QTL for Shear force
Chr.5 : Asso:154266 .
QTL for Breast muscle percentage
Chr.4 : Asso:154281 .
QTL/association Reported by chromosomes:
Chr.1 (9) ,
Chr.4 (17) ,
Chr.5 (6) ,
Chr.8 (1) ,
Chr.12 (2) ,
Chr.14 (1) ,
Chr.17 (1) ,
Chr.18 (1) ,
Chr.19 (2) ,
Chr.20 (1) ,
Chr.24 (2) ,
Chr.25 (3) ,
Chr.27 (1) .
Number of gene-based eQTL/associations:
eQTL for patatin like phospholipase domain containing 7 (PNPLA7) Chr.2 : eQTL:180876 ; eQTL for myosin, heavy chain 13, skeletal muscle (MYH13) Chr.4 : eQTL:180888 ; eQTL for calpain 3, (p94) (CAPN3) Chr.4 : eQTL:180889 ; eQTL for collagen type VI alpha 3 chain (COL6A3) Chr.4 : eQTL:180887 ; eQTL for sarcoglycan beta (SGCB) Chr.5 : eQTL:180890 ; eQTL for myosin, heavy chain 1B, skeletal muscle (similar to human myosin, heavy chain 1, skeletal muscle, adult) (MYH1B) Chr.6 : eQTL:180906 ; eQTL for dysferlin (DYSF) Chr.6 : eQTL:180898 ; eQTL for platelet-derived growth factor receptor, alpha polypeptide (PDGFRA) Chr.6 : eQTL:180899 ; eQTL for myosin, heavy chain 15 (MYH15) Chr.6 : eQTL:180891 ; eQTL for fibronectin 1 (FN1) Chr.9 : eQTL:180907 ; eQTL for tubulin beta 4B class IVb (TUBB4B) Chr.13 : eQTL:180930 ; eQTL for leucine rich repeat and sterile alpha motif containing 1 (LRSAM1) Chr.17 : eQTL:180947 ; eQTL for caveolin 3 (CAV3) Chr.18 : eQTL:180962 ; eQTL for myosin, heavy chain 1F, skeletal muscle (similar to human myosin, heavy chain 1, skeletal muscle, adult) (MYH1F) Chr.18 : eQTL:180960 ; eQTL for myosin, heavy chain 1E, skeletal muscle (similar to human myosin, heavy chain 1, skeletal muscle, adult) (MYH1E) Chr.23 : eQTL:180963 ;
Cite this Dataset :
Animal QTLdb: Dataset from Pampouille E, Berri C, Boitard S, Hennequet-Antier C, Beauclercq SA, Godet E, Praud C, Jégo Y, Le Bihan-Duval E (2018). Mapping QTL for white striping in relation to breast muscle yield and meat quality traits in broiler chickens. BMC genomics, 19(1): 202;
Curated into QTLdb on 2018-04-10. Universal link to this data set:
https://www.animalgenome.org/QTLdb/supp/?t=CfSe9N1YiT
OR
Pampouille E, Berri C, Boitard S, Hennequet-Antier C, Beauclercq SA, Godet E, Praud C, Jégo Y, Le Bihan-Duval E (2018). Mapping QTL for white striping in relation to breast muscle yield and meat quality traits in broiler chickens. BMC genomics, 19(1): 202; DOI: https://dx.doi.org/10.1186/s12864-018-4598-9
