Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of pigmentation traits:
5
Number of QTL / associations found:
960
Number of chromosomes where QTL / associations are found:
27
Chi-squared (χ2) test: are pigmentation traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome Z
16203.16840
26
9e-41
8.100000e-40
Chromosome 1
2284.04340
26
9e-41
8.100000e-40
Chromosome 2
38.54340
26
0.05387064
5.387064e-02
Chromosome 3
38.54340
26
0.05387064
5.387064e-02
Chromosome 4
114.66840
26
4.171475e-13
5.119537e-13
Chromosome 5
158.34030
26
6.159015e-21
1.385778e-20
Chromosome 6
131.29340
26
5.036834e-16
7.157606e-16
Chromosome 7
158.34030
26
6.159015e-21
1.385778e-20
Chromosome 8
43.34030
26
0.01777882
1.920113e-02
Chromosome 9
71.54340
26
3.944406e-06
4.437457e-06
Chromosome 10
140.02780
26
1.365811e-17
2.048717e-17
Chromosome 11
149.04340
26
3.145296e-19
5.661533e-19
Chromosome 12
122.84030
26
1.575209e-14
2.126532e-14
Chromosome 13
140.02780
26
1.365811e-17
2.048717e-17
Chromosome 14
140.02780
26
1.365811e-17
2.048717e-17
Chromosome 15
149.04340
26
3.145296e-19
5.661533e-19
Chromosome 17
158.34030
26
6.159015e-21
1.385778e-20
Chromosome 18
167.91840
26
1.026769e-22
3.080307e-22
Chromosome 19
149.04340
26
3.145296e-19
5.661533e-19
Chromosome 20
8610.29340
26
9e-41
8.100000e-40
Chromosome 21
114.66840
26
4.171475e-13
5.119537e-13
Chromosome 23
167.91840
26
1.026769e-22
3.080307e-22
Chromosome 24
78.02780
26
4.206872e-07
4.938502e-07
Chromosome 25
167.91840
26
1.026769e-22
3.080307e-22
Chromosome 26
167.91840
26
1.026769e-22
3.080307e-22
Chromosome 27
167.91840
26
1.026769e-22
3.080307e-22
Chromosome 33
167.91840
26
1.026769e-22
3.080307e-22
Chi-squared (χ2) test: Which of the 5 pigmentation traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Comb color
330.12721
4
3.42028e-70
5.700467e-70
Earlobe color
411.0696
4
1.128142e-87
2.820355e-87
Feather pigmentation
595.10179
4
1.779535e-127
8.897675e-127
Skin color
141.59362
4
1.286593e-29
1.608241e-29
Visceral peritoneum pigmentation
44.74194
4
4.498709e-09
4.498709e-09
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
27
χ2
=
30200.718900
Number of traits:
5
df
=
104
Number of QTLs:
960
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
