Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of egg quality traits:
33
Number of QTL / associations found:
2,844
Number of chromosomes where QTL / associations are found:
31
Chi-squared (χ2) test: are egg quality traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome Z
78.17271
30
3.605425e-06
3.725606e-06
Chromosome 1
1032535.91001
30
9e-41
1.116000e-40
Chromosome 2
95.07894
30
1.093312e-08
1.210453e-08
Chromosome 3
34.13784
30
0.2753556
2.753556e-01
Chromosome 4
6103.16751
30
9e-41
1.116000e-40
Chromosome 5
657.13461
30
4.132518e-119
2.562161e-118
Chromosome 6
1117.66116
30
6.846601e-216
7.074821e-215
Chromosome 7
1415.99535
30
3.084715e-279
4.781308e-278
Chromosome 8
220.19811
30
7.719187e-31
8.862770e-31
Chromosome 9
238.35735
30
2.639147e-34
3.146675e-34
Chromosome 10
688.24338
30
1.384815e-125
1.073232e-124
Chromosome 11
1956.02814
30
9e-41
1.116000e-40
Chromosome 12
1461.49245
30
6.333736e-289
1.963458e-287
Chromosome 13
2063.56821
30
9e-41
1.116000e-40
Chromosome 14
1800.11370
30
9e-41
1.116000e-40
Chromosome 15
2522.50482
30
9e-41
1.116000e-40
Chromosome 16
2769.23922
30
9e-41
1.116000e-40
Chromosome 17
2230.27398
30
9e-41
1.116000e-40
Chromosome 18
2644.43322
30
9e-41
1.116000e-40
Chromosome 19
2009.43864
30
9e-41
1.116000e-40
Chromosome 20
2522.50482
30
9e-41
1.116000e-40
Chromosome 21
78.17271
30
3.605425e-06
3.725606e-06
Chromosome 22
2832.72132
30
9e-41
1.116000e-40
Chromosome 23
2522.50482
30
9e-41
1.116000e-40
Chromosome 24
2287.28148
30
9e-41
1.116000e-40
Chromosome 25
2961.84372
30
9e-41
1.116000e-40
Chromosome 26
2009.43864
30
9e-41
1.116000e-40
Chromosome 27
2583.10932
30
9e-41
1.116000e-40
Chromosome 28
2583.10932
30
9e-41
1.116000e-40
Chromosome 30
2961.84372
30
9e-41
1.116000e-40
Chromosome 33
2896.92282
30
9e-41
1.116000e-40
Chi-squared (χ2) test: Which of the 33 egg quality traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Albumen height
216.95082
32
2.328652e-29
5.123034e-29
Albumen percentage
165.83602
32
5.466395e-20
1.002172e-19
Albumen weight
90.71277
32
1.595921e-07
1.950570e-07
Blood and meat spots
684.90019
32
1.576395e-123
1.040421e-122
Egg aftertaste
41.44775
32
0.1224184
1.303164e-01
Egg weight
542.75195
32
3.585739e-94
1.690420e-93
Eggshell biliverdin amount
867.0626
32
1.492146e-161
2.462041e-160
Eggshell color
575.42366
32
6.908327e-101
3.799580e-100
Eggshell color density
25.33333
32
0.7923082
8.170678e-01
Eggshell cuticle coverage
265.7627
32
1.195041e-38
3.943635e-38
Eggshell effective layer thickness
464.43001
32
3.556502e-78
1.467057e-77
Eggshell lightness
243.18756
32
2.548481e-34
7.008323e-34
Eggshell mammillary density
780
32
2.463819e-143
2.032651e-142
Eggshell mammillary layer thickness
42.0909
32
0.1092908
1.202199e-01
Eggshell percentage
130.4665
32
7.605382e-14
1.045740e-13
Eggshell protoporphyrin amount
216.95555
32
2.323904e-29
5.123034e-29
Eggshell redness
149.20758
32
4.684123e-17
8.135582e-17
Eggshell shape
135.24558
32
1.184052e-14
1.776078e-14
Eggshell stiffness
201.27651
32
1.938828e-26
3.763607e-26
Eggshell strength
147.81493
32
8.183514e-17
1.350280e-16
Eggshell thickness
343.78466
32
6.307413e-54
2.312718e-53
Eggshell total pigment amount
814.22966
32
1.728986e-150
1.901885e-149
Eggshell weight
70.47485
32
0.0001028985
1.212732e-04
Eggshell yellowness
131.86525
32
4.42128e-14
6.343576e-14
Haugh units
213.92934
32
8.566595e-29
1.766860e-28
Long length of egg
56.67571
32
0.00458321
5.215377e-03
Short length of egg
125.37454
32
5.401577e-13
7.130082e-13
Specific gravity
14.85488
32
0.9957872
9.957872e-01
Yolk color
103.5716
32
1.780078e-09
2.259330e-09
Yolk height
140.5173
32
1.490443e-15
2.342125e-15
Yolk index
260.47091
32
1.248997e-37
3.746991e-37
Yolk water content
1287.34631
32
3.019994e-250
9.965980e-249
Yolk weight
220.6038
32
4.803085e-30
1.219245e-29
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
31
χ2
=
1088880.602040
Number of traits:
33
df
=
960
Number of QTLs:
2,844
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
