| QTL Map Information |
|---|
| Chromosome: | 11 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
48.2-48.4 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs396830038 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | 0.02268 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
Edit |
Map view
|
| Extended information: |
|---|
| (none) |
User inputs on QTL #160243
Add your annotations
Add your comments
Report problems
|
| QTL Experiment in Brief |
|---|
| Animals: | Curly-coated horses included American Bashkir Curly, Miniature ABC, Kentucky Mountain Saddle Horse, Foxtrotter, Oldenburger, Danish Warmblood, Holsteiner, and ABCH/QH crossbreed. Straight-coated horses comprised ABCHs, QH, Missouri Foxtrotter, Oldenburger, and ABCH/Paint horse cross. |
| Breeds associated:
|
| Design: | Animals were genotyped using the Affymetrix Axiom Equine Genotyping Array 670K and analyzed for curly vs. straight coat and presence of hypotrichosis. A total of |
| Analysis: | A max (T) permutation test was done. Following GWAS, next-generation sequencing was performed to identify possible causative variants for curly coat and hypotrichosis. |
| Software: | PLINK, SAS, Beagle |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Thomer A, Gottschalk M, Christmann A, Naccache F, Jung K, Hewicker-Trautwein M, Distl O, Metzger J |
| Affiliation: | Institute for Animal Breeding and Genetics, University of Veterinary Medicine Hannover Foundation, Hannover, 30559, Germany |
| Title: | An epistatic effect of KRT25 on SP6 is involved in curly coat in horses |
| Journal: | Scientific reports, 2018, 8(1): 6374 |
| Links: |
PubMed | Abstract | List all data
| Edit |
User inputs on reference #29686323
Add your comments
Note similar findings
Note contradictions
|
