Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of gaits traits:
3
Number of QTL / associations found:
309
Number of chromosomes where QTL / associations are found:
28
Chi-squared (χ2) test: are gaits traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome 1
183.26247
27
3.633494e-25
5.086892e-24
Chromosome 2
2.38869
27
0.998329325823115
9.999997e-01
Chromosome 3
45.68967
27
0.01373663
7.692513e-02
Chromosome 4
6.89355
27
0.9999676
9.999997e-01
Chromosome 5
17.55375
27
0.9165676
9.999997e-01
Chromosome 6
0.25278
27
0.998329325823115
9.999997e-01
Chromosome 7
4.42752
27
0.9999997
9.999997e-01
Chromosome 8
27.37899
27
0.4434974
9.999997e-01
Chromosome 9
9.90327
27
0.9989033
9.999997e-01
Chromosome 10
13.45665
27
0.9860162
9.999997e-01
Chromosome 11
2.38869
27
0.998329325823115
9.999997e-01
Chromosome 12
13.45665
27
0.9860162
9.999997e-01
Chromosome 13
27.37899
27
0.4434974
9.999997e-01
Chromosome 14
13.45665
27
0.9860162
9.999997e-01
Chromosome 15
27.37899
27
0.4434974
9.999997e-01
Chromosome 16
6.89355
27
0.9999676
9.999997e-01
Chromosome 17
45.68967
27
0.01373663
7.692513e-02
Chromosome 19
1.04889
27
0.998329325823115
9.999997e-01
Chromosome 20
0.29160
27
0.998329325823115
9.999997e-01
Chromosome 21
27.37899
27
0.4434974
9.999997e-01
Chromosome 22
27.37899
27
0.4434974
9.999997e-01
Chromosome 23
412.71879
27
1.276196e-70
3.573349e-69
Chromosome 24
6.89355
27
0.9999676
9.999997e-01
Chromosome 25
169.41783
27
1.398609e-22
1.305368e-21
Chromosome 26
13.45665
27
0.9860162
9.999997e-01
Chromosome 29
27.37899
27
0.4434974
9.999997e-01
Chromosome 30
1.12656
27
0.998329325823115
9.999997e-01
Chromosome 31
0.00036
27
0.998329325823115
9.999997e-01
Chi-squared (χ2) test: Which of the 3 gaits traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Alternate gaits
0.72796
2
0.6949051
6.949051e-01
Cantering ability
76.25
2
2.770275e-17
6.851288e-17
Walk score
75.24995
2
4.567525e-17
6.851288e-17
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
28
χ2
=
1134.941730
Number of traits:
3
df
=
54
Number of QTLs:
309
p-value
=
3.696397e-202
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
