| QTL Map Information |
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| Chromosome: | 1 |
| QTL Peak Location: | n/a |
| QTL Span: | n/a
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Upper, "Suggestive": | n/a |
| Upper, "Significant": | rs133668207 |
| Peak: | |
| Lower, "Significant": | rs133680438 |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | QTL |
| Model tested: | n/a |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
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VARIANCE | 0.58% | | P_values | 0.03 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
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| QTL Experiment in Brief |
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| Animals: | Animals were Hereford cattle. |
| Breeds associated:
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| Design: | Animals were genotyped using the Illumina BovineHD BeadChip, and GWAS was performed for eyelid pigmentation. A total of 591,755 SNPs were used for analysis. |
| Analysis: | Genomic regions associated with total eyelid pigmentation were identified based on two alternative approaches. The first approach was the amount of genetic variance explained by 2.0 Mb window of adjacent SNPs evaluated across the entire bovine genome. The second approach was the identification of relevant SNP markers based on their P-values. |
| Software: | GIBBS2F90, POSTGIBBSF90 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Jara E, Peñagaricano F, Armstrong E, Ciappesoni G, Iriarte A, Navajas EA |
| Affiliation: | Unidad de Genética y Mejora Animal, Departamento de Producción Animal, Facultad de Veterinaria, Universidad de la República, Montevideo 11600, Uruguay |
| Title: | Revealing the genetic basis of eyelid pigmentation in Hereford cattle |
| Journal: | Journal of animal science, 2022, 100(5):skac110 |
| Links: |
PubMed | Abstract | List all data
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