| QTL Map Information |
|---|
| Chromosome: | 19 |
| QTL Peak Location: | 13.31 (cM) |
| QTL Span: | 13.31-13.31 (cM)
7.4-7.4 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs110056766 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Genome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.05 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Hanwoo steers. |
| Breeds associated:
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| Design: | Animals were genotyped using a customized Hanwoo SNP50 BeadChip, with data imputed to HD, then sequence level, and analyzed for carcass traits. A total of 450,062 SNPs were used for analysis. |
| Analysis: | A mixed linear model was used for GWAS. |
| Software: | Eagle v.2.3.2, Minimac3, GCTA v.1.91.4 beta3 |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Srikanth K, Lee SH, Chung KY, Park JE, Jang GW, Park MR, Kim NY, Kim TH, Chai HH, Park WC, Lim D |
| Affiliation: | Animal Genomics and Bioinformatics Division, National Institute of Animal Science, RDA, Wanju 55365, Korea |
| Title: | A Gene-Set Enrichment and Protein-Protein Interaction Network-Based GWAS with Regulatory SNPs Identifies Candidate Genes and Pathways Associated with Carcass Traits in Hanwoo Cattle |
| Journal: | Genes, 2020, 11 (3):E316 |
| Links: |
PubMed | Abstract | List all data
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