| QTL Map Information |
|---|
| Chromosome: | 6 |
| QTL Peak Location: | 70.68 (cM) |
| QTL Span: | 70.68-70.68 (cM)
64.0-64.0 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs383024906 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | CNV |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Comparison-wise |
| Threshold significance level: | Significant |
 |
P_values | 2.79E-11 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
| (none) |
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| QTL Experiment in Brief |
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| Animals: | Animals were purebred and crossbred Holstein-Friesian and Jersey cattle. |
| Breeds associated:
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| Design: | Animals were genotyped using a variety of SNP panels, with data imputed to whole-genome sequence, and analyzed for extent of white spotting. A total of 18,641,995 variants were used for analysis. |
| Analysis: | Mixed linear models were used for GWAS. |
| Software: | Beagle, GCTA |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Jivanji S, Worth G, Lopdell TJ, Yeates A, Couldrey C, Reynolds E, Tiplady K, McNaughton L, Johnson TJJ, Davis SR, Harris B, Spelman R, Snell RG, Garrick D, Littlejohn MD |
| Affiliation: | Livestock Improvement Corporation (LIC), 605 Ruakura Rd, Newstead, 3286, New Zealand |
| Title: | Genome-wide association analysis reveals QTL and candidate mutations involved in white spotting in cattle |
| Journal: | Genetics, Selection, Evolution : GSE, 2019, 51(1): 62 |
| Links: |
PubMed | Abstract | List all data
| Edit |
| Additional Information |
|---|
| Comments: | Tag SNP for CNV region Chr6:65,657,051–65,657,595 bp (UMD_3.1) |
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