| QTL Map Information |
|---|
| Chromosome: | 6 |
| QTL Peak Location: | 99.77 (cM) |
| QTL Span: | 99.77-99.77 (cM)
88.6-88.6 (Mbp) |
 |
Upper, "Suggestive": | n/a |
| Upper, "Significant": | n/a |
| Peak: | rs110157688 |
| Lower, "Significant": | n/a |
| Lower, "Suggestive": | n/a |
| Marker type: | SNP |
| Analysis type: | Association |
| Model tested: | Mendelian |
| Test base: | Chromosome-wise |
| Threshold significance level: | Significant |
 |
P_values | <0.001 | | Dominance effect: | n/a |
| Additive effect: | n/a |
| Associated Gene: | n/a |
| Cis/Trans acting type: |  |
| Links:
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| Extended information: |
|---|
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| QTL Experiment in Brief |
|---|
| Animals: | Animals were Norwegian Red cattle.
Animal breed (IDs) involved: |
| Breeds associated:
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| Design: | Animals were genotyped using the Affymetrix 25K SNP array, Illumina BovineSNP50 BeadChip, or BovineHD BeadChip, with all data imputed to 777K. A total of 26,737 SNPs on BTA6 were used for initial single-marker analyses. |
| Analysis: | Mixed linear model-based association analysis was performed. For the traits that were significant in initial analyses, additional analyses were carried out using 65,156 markers in a 12-Mb region on BTA6. |
| Software: | GCTA, ASReml, SAMtools, Beagle |
| Notes: | |
| Links: | Edit |
| Reference |
|---|
| Authors: | Olsen HG, Knutsen TM, Lewandowska-Sabat AM, Grove H, Nome T, Svendsen M, Arnyasi M, Sodeland M, Sundsaasen KK, Dahl SR, Heringstad B, Hansen HH, Olsaker I, Kent MP, Lien S |
| Affiliation: | Centre for Integrative Genetics (CIGENE), Department of Animal and Aquacultural Sciences, Norwegian University of Life Sciences, PO Box 5003, 1432, Ås, Norway |
| Title: | Fine mapping of a QTL on bovine chromosome 6 using imputed full sequence data suggests a key role for the group-specific component (GC) gene in clinical mastitis and milk production |
| Journal: | Genetics, Selection, Evolution : GSE, 2016, 48(1): 79 |
| Links: |
PubMed | Abstract | List all data
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| Additional Information |
|---|
| Comments: | DYD |
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