Authors:
Jakimowicz M, Szyda J, Zarnecki A, Jagusiak W, Morek-Kopeć M, Kosińska-Selbi B, Suchocki T
(Contact: tomasz.suchocki@upwr.edu.pl )
Affiliation:
Biostatistics Group, Department of Genetics, Wrocław University of Environmental and Life Sciences, Kożuchowska 7, 51-631 Wrocław, Poland
Title:
Genome-Wide Genomic and Functional Association Study for Workability and Calving Traits in Holstein Cattle
Journal:
Animals : An Open Access Journal From MDPI, 12(9):1127 (2022)
DOI :
10.3390/ani12091127
Links:
PubMed | Abstract
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( Related study: none )
Click on each trait to browse further along the related trait ontology tree
Click on each chromosome number to find the detailed QTL information on that chromosome
Number of QTL/association reported by traits:
QTL for Calving ease reported for chromosome(s):
Chr.X : Asso:314024 , Asso:314025 , Asso:314026 , Asso:314027 , Asso:314028 , Asso:314029 , Asso:314030 , Asso:314031 . Chr.5 : Asso:313956 , Asso:313959 , Asso:313958 , Asso:313957 , Asso:313960 , Asso:313961 , Asso:313962 , Asso:313963 , Asso:313964 . Chr.6 : Asso:314015 , Asso:314016 , Asso:314017 . Chr.7 : Asso:313965 , Asso:313966 . Chr.9 : Asso:314018 , Asso:314019 . Chr.17 : Asso:313967 , Asso:313968 , Asso:313969 , Asso:313970 , Asso:313971 , Asso:313972 , Asso:313973 . Chr.18 : Asso:313974 , Asso:313975 , Asso:313976 , Asso:313977 , Asso:313978 , Asso:313979 , Asso:313980 , Asso:313981 , Asso:313982 , Asso:313983 , Asso:313984 , Asso:313985 , Asso:313986 , Asso:313987 , Asso:313988 , Asso:313989 , Asso:313990 , Asso:313991 , Asso:313992 , Asso:313993 , Asso:313994 , Asso:313995 , Asso:313996 , Asso:313997 , Asso:313998 , Asso:313999 , Asso:314000 , Asso:314001 , Asso:314002 , Asso:314003 , Asso:314004 , Asso:314005 , Asso:314020 , Asso:314021 , Asso:314022 . Chr.19 : Asso:314006 . Chr.20 : Asso:314023 . Chr.21 : Asso:314007 , Asso:314008 , Asso:314009 , Asso:314010 . Chr.25 : Asso:314011 . Chr.29 : Asso:314012 , Asso:314013 , Asso:314014 .
QTL for Stillbirth reported for chromosome(s):
Chr.X : Asso:314053 , Asso:314054 , Asso:314055 , Asso:314056 , Asso:314070 , Asso:314071 , Asso:314072 , Asso:314073 . Chr.3 : Asso:314057 . Chr.5 : Asso:314032 . Chr.9 : Asso:314058 , Asso:314059 , Asso:314060 , Asso:314061 , Asso:314062 , Asso:314063 , Asso:314064 . Chr.18 : Asso:314033 , Asso:314034 , Asso:314035 , Asso:314036 , Asso:314037 , Asso:314038 , Asso:314039 , Asso:314040 , Asso:314041 , Asso:314042 , Asso:314043 , Asso:314044 , Asso:314045 , Asso:314046 , Asso:314047 , Asso:314048 , Asso:314049 , Asso:314050 , Asso:314051 , Asso:314065 , Asso:314066 , Asso:314067 . Chr.23 : Asso:314052 , Asso:314069 . Chr.25 : Asso:314068 .
QTL for Temperament reported for chromosome(s):
Chr.X : Asso:314074 , Asso:314075 , Asso:314076 , Asso:314077 , Asso:314078 , Asso:314079 , Asso:314080 .
QTL for Milking speed reported for chromosome(s):
Chr.X : Asso:314105 . Chr.1 : Asso:314081 . Chr.4 : Asso:314082 . Chr.5 : Asso:314083 , Asso:314084 , Asso:314085 . Chr.6 : Asso:314086 , Asso:314087 , Asso:314088 , Asso:314089 , Asso:314090 . Chr.9 : Asso:314091 . Chr.19 : Asso:314092 , Asso:314093 , Asso:314094 , Asso:314095 , Asso:314096 , Asso:314097 , Asso:314098 , Asso:314099 , Asso:314100 , Asso:314101 , Asso:314102 . Chr.20 : Asso:314103 . Chr.29 : Asso:314104 .
QTL/association Reported by chromosomes:
Chr.X (24) ,
Chr.1 (1) ,
Chr.3 (1) ,
Chr.4 (1) ,
Chr.5 (13) ,
Chr.6 (8) ,
Chr.7 (2) ,
Chr.9 (10) ,
Chr.17 (7) ,
Chr.18 (57) ,
Chr.19 (12) ,
Chr.20 (2) ,
Chr.21 (4) ,
Chr.23 (2) ,
Chr.25 (2) ,
Chr.29 (4) .
Pleiotropic QTL found:
BTX_rs110689641 , on Chr.X : 2 QTL; involving 2 traits in 0 breeds.
BTX_rs109498447 , on Chr.X : 3 QTL; involving 2 traits in 0 breeds.
BTA5_ rs41257416 , on Chr.5 : 2 QTL; involving 2 traits in 0 breeds.
BTA9_rs43610539 , on Chr.9 : 2 QTL; involving 2 traits in 0 breeds.
BTA9_rs43608567 , on Chr.9 : 2 QTL; involving 2 traits in 0 breeds.
BTA18_ rs109341458 , on Chr.18 : 2 QTL; involving 2 traits in 0 breeds.
BTA18_ rs108984194 , on Chr.18 : 2 QTL; involving 2 traits in 0 breeds.
BTA18_ rs110780496 , on Chr.18 : 2 QTL; involving 2 traits in 0 breeds.
BTA18_ rs110397396 , on Chr.18 : 2 QTL; involving 2 traits in 0 breeds.
BTA18_ rs41636749 , on Chr.18 : 2 QTL; involving 2 traits in 0 breeds.
BTA18_ rs42843551 , on Chr.18 : 3 QTL; involving 2 traits in 0 breeds.
BTA18_rs41665732 , on Chr.18 : 2 QTL; involving 2 traits in 0 breeds.
BTA18_rs109478645 , on Chr.18 : 3 QTL; involving 2 traits in 0 breeds.
BTA18_rs109882115 , on Chr.18 : 2 QTL; involving 2 traits in 0 breeds.
BTA18_rs41636786 , on Chr.18 : 2 QTL; involving 2 traits in 0 breeds.
BTA18_rs41664920 , on Chr.18 : 2 QTL; involving 2 traits in 0 breeds.
BTA18_rs41582522 , on Chr.18 : 2 QTL; involving 2 traits in 0 breeds.
BTA18_rs43182024 , on Chr.18 : 2 QTL; involving 2 traits in 0 breeds.
BTA18_rs109530681 , on Chr.18 : 4 QTL; involving 2 traits in 0 breeds.
BTA18_rs110889414 , on Chr.18 : 3 QTL; involving 2 traits in 0 breeds.
BTA18_rs109998463 , on Chr.18 : 2 QTL; involving 2 traits in 0 breeds.
BTA18_rs42563166 , on Chr.18 : 3 QTL; involving 2 traits in 0 breeds.
BTA18_rs110912084 , on Chr.18 : 2 QTL; involving 2 traits in 0 breeds.
Number of gene-based eQTL/associations:
Cite this Dataset :
Animal QTLdb: Dataset from Jakimowicz M, Szyda J, Zarnecki A, Jagusiak W, Morek-Kopeć M, Kosińska-Selbi B, Suchocki T (2022). Genome-Wide Genomic and Functional Association Study for Workability and Calving Traits in Holstein Cattle. Animals : an open access journal from MDPI, 12(9):1127;
Curated into QTLdb on 2025-02-13. Universal link to this data set:
https://www.animalgenome.org/QTLdb/supp/?t=SwAw4K4OjB
OR
Jakimowicz M, Szyda J, Zarnecki A, Jagusiak W, Morek-Kopeć M, Kosińska-Selbi B, Suchocki T (2022). Genome-Wide Genomic and Functional Association Study for Workability and Calving Traits in Holstein Cattle. Animals : an open access journal from MDPI, 12(9):1127; DOI: https://dx.doi.org/10.3390/ani12091127