Authors: Croué I, Michenet A, Leclerc H, Ducrocq V
(Contact: iola.croue@inra.fr ) Affiliation: ALLICE, F-78350 Jouy-en-Josas, France; INRA, AgroParisTech, Université Paris Saclay, F-78350 Jouy-en-Josas, France; Institut de l'Elevage, F-78350 Jouy-en-Josas, France Title: Genomic analysis of claw lesions in Holstein cows: Opportunities for genomic selection, quantitative trait locus detection, and gene identification Journal: Journal Of Dairy Science, 102(7): 6306-6318 (2019)
DOI :
S0022-0302(19)30401-1 Links:
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( Related study: none )
Click on each trait to browse further along the related trait ontology tree
Click on each chromosome number to find the detailed QTL information on that chromosome
Number of QTL/association reported by traits:
QTL for Digital dermatitis
Chr.1 : QTL:220879 , QTL:220880 . Chr.2 : QTL:220881 , QTL:220882 . Chr.3 : QTL:220883 , QTL:220884 . Chr.4 : QTL:220885 , QTL:220886 . Chr.5 : QTL:220887 . Chr.7 : QTL:220888 , QTL:220889 . Chr.8 : QTL:220890 , QTL:220891 . Chr.9 : QTL:220892 , QTL:220893 . Chr.10 : QTL:220894 , QTL:220895 , QTL:220896 . Chr.12 : QTL:220897 . Chr.13 : QTL:220898 , QTL:220899 , QTL:220900 , QTL:220901 . Chr.14 : QTL:220902 . Chr.17 : QTL:220903 . Chr.19 : QTL:220904 . Chr.20 : QTL:220905 . Chr.21 : QTL:220906 , QTL:220907 , QTL:220908 , QTL:220909 . Chr.22 : QTL:220910 . Chr.23 : QTL:220911 . Chr.24 : QTL:220912 , QTL:220913 . Chr.25 : QTL:220914 , QTL:220915 . Chr.28 : QTL:220916 . Chr.29 : QTL:220917 , QTL:220918 .
QTL for Heel horn erosion
Chr.1 : QTL:220919 . Chr.2 : QTL:220920 . Chr.3 : QTL:220921 , QTL:220922 . Chr.4 : QTL:220923 , QTL:220924 . Chr.8 : QTL:220950 , QTL:220951 . Chr.9 : QTL:220952 . Chr.11 : QTL:220953 , QTL:220954 . Chr.12 : QTL:220955 . Chr.15 : QTL:220956 , QTL:220957 . Chr.16 : QTL:220958 . Chr.17 : QTL:220959 . Chr.18 : QTL:220960 . Chr.21 : QTL:220961 . Chr.27 : QTL:220962 . Chr.29 : QTL:220963 , QTL:220964 .
QTL for Sole ulcer
Chr.1 : QTL:220925 , QTL:220926 . Chr.3 : QTL:220927 . Chr.4 : QTL:220928 , QTL:220929 . Chr.6 : QTL:220930 . Chr.7 : QTL:220931 . Chr.9 : QTL:220932 . Chr.10 : QTL:220933 . Chr.12 : QTL:220934 , QTL:220935 . Chr.13 : QTL:220936 . Chr.14 : QTL:220937 . Chr.15 : QTL:220938 . Chr.17 : QTL:220939 , QTL:220940 . Chr.18 : QTL:220941 . Chr.20 : QTL:220942 . Chr.22 : QTL:220943 . Chr.24 : QTL:220944 , QTL:220945 . Chr.28 : QTL:220946 , QTL:220947 , QTL:220948 , QTL:220949 .
QTL for Interdigital hyperplasia
Chr.1 : QTL:220965 , QTL:220966 . Chr.2 : QTL:220967 , QTL:220968 . Chr.3 : QTL:220969 , QTL:220970 . Chr.4 : QTL:220971 . Chr.5 : QTL:220972 , QTL:220973 , QTL:220974 . Chr.6 : QTL:220975 , QTL:220976 . Chr.7 : QTL:220977 . Chr.8 : QTL:220978 , QTL:220979 . Chr.9 : QTL:220980 , QTL:220981 , QTL:220982 , QTL:220983 . Chr.11 : QTL:220984 , QTL:220985 , QTL:220986 . Chr.13 : QTL:220987 , QTL:220988 . Chr.14 : QTL:220989 , QTL:220990 , QTL:220991 , QTL:220992 , QTL:220993 . Chr.15 : QTL:220994 , QTL:220995 . Chr.16 : QTL:220996 , QTL:220997 . Chr.17 : QTL:220998 . Chr.18 : QTL:220999 , QTL:221000 . Chr.19 : QTL:221001 . Chr.20 : QTL:221002 . Chr.22 : QTL:221003 . Chr.23 : QTL:221004 . Chr.25 : QTL:221005 , QTL:221006 . Chr.26 : QTL:221007 , QTL:221008 , QTL:221009 . Chr.29 : QTL:221010 , QTL:221011 .
QTL for Sole hemorrhage
Chr.1 : QTL:221012 , QTL:221013 . Chr.2 : QTL:221014 . Chr.5 : QTL:221015 . Chr.6 : QTL:221021 . Chr.7 : QTL:221016 . Chr.8 : QTL:221022 . Chr.11 : QTL:221017 , QTL:221023 . Chr.14 : QTL:221024 . Chr.15 : QTL:221025 . Chr.17 : QTL:221018 . Chr.22 : QTL:221026 . Chr.25 : QTL:221019 , QTL:221020 . Chr.28 : QTL:221027 .
QTL for White line disease
Chr.1 : Asso:221773 , Asso:221774 , Asso:221775 . Chr.2 : Asso:221776 , Asso:221777 , Asso:221778 . Chr.4 : Asso:221779 . Chr.6 : Asso:221780 . Chr.7 : Asso:221781 , Asso:221782 . Chr.8 : Asso:221783 , Asso:221784 . Chr.10 : Asso:221785 . Chr.14 : Asso:221786 . Chr.15 : Asso:221787 , Asso:221788 . Chr.16 : Asso:221789 , Asso:221790 . Chr.17 : Asso:221791 . Chr.18 : Asso:221792 , Asso:221793 , Asso:221794 . Chr.19 : Asso:221795 . Chr.22 : Asso:221796 , Asso:221797 . Chr.23 : Asso:221798 , Asso:221799 . Chr.24 : Asso:221800 . Chr.25 : Asso:221801 . Chr.26 : Asso:221802 . Chr.27 : Asso:221803 . Chr.28 : Asso:221804 , Asso:221805 .
QTL/association Reported by chromosomes:
Chr.1 (12) ,
Chr.2 (9) ,
Chr.3 (7) ,
Chr.4 (8) ,
Chr.5 (5) ,
Chr.6 (5) ,
Chr.7 (7) ,
Chr.8 (9) ,
Chr.9 (8) ,
Chr.10 (5) ,
Chr.11 (7) ,
Chr.12 (4) ,
Chr.13 (7) ,
Chr.14 (9) ,
Chr.15 (8) ,
Chr.16 (5) ,
Chr.17 (7) ,
Chr.18 (7) ,
Chr.19 (3) ,
Chr.20 (3) ,
Chr.21 (5) ,
Chr.22 (6) ,
Chr.23 (4) ,
Chr.24 (5) ,
Chr.25 (7) ,
Chr.26 (4) ,
Chr.27 (2) ,
Chr.28 (8) ,
Chr.29 (6) .
Number of gene-based eQTL/associations:
Cite this Dataset :
Animal QTLdb: Dataset from Croué I, Michenet A, Leclerc H, Ducrocq V (2019). Genomic analysis of claw lesions in Holstein cows: Opportunities for genomic selection, quantitative trait locus detection, and gene identification. Journal of dairy science, 102(7): 6306-6318;
Curated into QTLdb on 2021-05-11. Universal link to this data set:
https://www.animalgenome.org/QTLdb/supp/?t=LmCt4V6FiU
OR
Croué I, Michenet A, Leclerc H, Ducrocq V (2019). Genomic analysis of claw lesions in Holstein cows: Opportunities for genomic selection, quantitative trait locus detection, and gene identification. Journal of dairy science, 102(7): 6306-6318; DOI: https://dx.doi.org/S0022-0302(19)30401-1
