Authors: Romé H, Varenne A, Hérault F, Chapuis H, Alleno C, Dehais P, Vignal A, Burlot T, Le Roy P
(Contact: pascale.leroy@rennes.inra.fr ) Affiliation: Agrocampus Ouest, UMR1348 PEGASE, 65 Rue de Saint Brieuc, 35042, Rennes, France Title: GWAS analyses reveal QTL in egg layers that differ in response to diet differences Journal: Genetics, Selection, Evolution : GSE, 47: 83 (2016)
DOI :
10.1186/s12711-015-0160-2 Links:
PubMed | Abstract
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( Related study: none )
Click on each trait to browse further along the related trait ontology tree
Click on each chromosome number to find the detailed QTL information on that chromosome
Number of QTL/association reported by traits:
QTL for Egg production rate
Chr.2 : QTL:214282 , QTL:214289 , QTL:214379 , Asso:214464 . Chr.3 : QTL:214374 . Chr.4 : QTL:214371 , Asso:214478 . Chr.5 : Asso:214465 . Chr.7 : Asso:214466 , Asso:214467 , Asso:214468 . Chr.8 : Asso:214469 . Chr.9 : QTL:214283 , QTL:214285 , QTL:214290 , QTL:214291 , QTL:214372 , QTL:214375 , QTL:214376 , Asso:214470 , Asso:214479 . Chr.11 : QTL:214284 , QTL:214292 , QTL:214373 . Chr.12 : QTL:214377 . Chr.13 : Asso:214471 , Asso:214480 . Chr.14 : QTL:214457 . Chr.17 : Asso:214462 , Asso:214472 . Chr.20 : QTL:214286 , QTL:214287 , QTL:214378 , Asso:214463 , Asso:214473 , Asso:214481 . Chr.21 : Asso:214474 . Chr.23 : Asso:214475 . Chr.27 : Asso:214476 . Chr.28 : QTL:214288 , QTL:214293 , Asso:214477 .
QTL for Eggshell shape
Chr.Z : QTL:214299 . Chr.1 : QTL:214380 , QTL:214412 . Chr.5 : QTL:214294 . Chr.9 : QTL:214381 . Chr.10 : QTL:214295 , QTL:214296 . Chr.19 : Asso:214482 . Chr.23 : QTL:214297 . Chr.24 : QTL:214413 . Chr.26 : QTL:214298 , QTL:214382 , QTL:214414 .
QTL for Egg weight
Chr.Z : QTL:214304 , QTL:214305 . Chr.4 : QTL:214415 . Chr.6 : QTL:214416 . Chr.10 : QTL:214300 , QTL:214417 . Chr.11 : QTL:214301 , QTL:214418 . Chr.21 : QTL:214302 . Chr.26 : QTL:214303 , QTL:214419 .
QTL for Short length of egg
Chr.Z : QTL:214308 , QTL:214309 . Chr.11 : QTL:214306 . Chr.21 : QTL:214420 . Chr.24 : QTL:214421 . Chr.26 : QTL:214307 , QTL:214422 .
QTL for Eggshell color
Chr.Z : QTL:214320 , QTL:214390 . Chr.2 : QTL:214310 , QTL:214383 , QTL:214423 . Chr.3 : QTL:214311 , QTL:214384 . Chr.5 : QTL:214385 , QTL:214424 , QTL:214425 . Chr.9 : QTL:214312 , QTL:214313 , QTL:214314 , QTL:214315 . Chr.10 : QTL:214386 , QTL:214458 . Chr.12 : QTL:214316 , QTL:214317 . Chr.13 : QTL:214387 . Chr.17 : QTL:214318 . Chr.18 : QTL:214319 . Chr.19 : QTL:214388 , QTL:214389 , QTL:214426 , QTL:214427 , QTL:214428 . Chr.23 : QTL:214429 .
QTL for Eggshell lightness
Chr.Z : QTL:214331 , QTL:214332 . Chr.2 : QTL:214394 . Chr.3 : QTL:214321 . Chr.5 : QTL:214322 , QTL:214323 , QTL:214432 . Chr.9 : QTL:214324 , QTL:214325 , QTL:214395 , QTL:214396 , QTL:214433 , QTL:214434 . Chr.10 : QTL:214326 , QTL:214435 . Chr.12 : QTL:214327 , QTL:214328 . Chr.17 : QTL:214436 . Chr.18 : QTL:214329 . Chr.19 : QTL:214330 , QTL:214397 , QTL:214437 . Chr.22 : QTL:214398 . Chr.23 : QTL:214438 .
QTL for Eggshell redness
Chr.Z : QTL:214341 , QTL:214401 . Chr.2 : QTL:214333 , QTL:214439 . Chr.3 : QTL:214334 . Chr.5 : QTL:214440 , QTL:214441 . Chr.9 : QTL:214335 , QTL:214336 , QTL:214337 . Chr.11 : QTL:214399 . Chr.12 : QTL:214338 , QTL:214339 , Asso:214484 . Chr.17 : QTL:214340 . Chr.19 : QTL:214400 .
QTL for Eggshell yellowness
Chr.Z : Asso:214459 . Chr.2 : QTL:214342 . Chr.3 : QTL:214343 , QTL:214344 , QTL:214408 , QTL:214409 , QTL:214442 . Chr.9 : QTL:214410 . Chr.10 : QTL:214345 , QTL:214346 , QTL:214443 , Asso:214485 . Chr.18 : QTL:214347 . Chr.19 : QTL:214411 .
QTL for Eggshell strength
Chr.2 : QTL:214391 . Chr.3 : QTL:214430 . Chr.9 : QTL:214348 . Chr.12 : QTL:214431 . Chr.24 : QTL:214392 , QTL:214444 . Chr.28 : QTL:214349 .
QTL for Eggshell stiffness
Chr.1 : QTL:214350 . Chr.2 : QTL:214351 , QTL:214445 . Chr.7 : QTL:214446 . Chr.8 : QTL:214352 . Chr.20 : Asso:214483 . Chr.22 : Asso:214460 . Chr.24 : QTL:214353 .
QTL for Blood and meat spots
Chr.Z : QTL:214359 , QTL:214360 , QTL:214361 , QTL:214461 . Chr.3 : QTL:214354 . Chr.8 : QTL:214355 . Chr.12 : QTL:214356 . Chr.20 : QTL:214357 . Chr.24 : QTL:214358 .
QTL for Haugh units
Chr.3 : QTL:214362 , QTL:214447 . Chr.4 : QTL:214448 . Chr.6 : QTL:214449 . Chr.9 : QTL:214393 . Chr.15 : QTL:214450 . Chr.21 : QTL:214363 . Chr.24 : QTL:214451 . Chr.26 : QTL:214364 . Chr.27 : QTL:214365 , QTL:214366 .
QTL for Yolk index
Chr.1 : QTL:214402 , QTL:214403 , QTL:214452 . Chr.6 : QTL:214367 , QTL:214404 , QTL:214453 . Chr.10 : QTL:214405 . Chr.15 : QTL:214454 . Chr.20 : QTL:214368 , QTL:214369 . Chr.21 : QTL:214406 , QTL:214455 . Chr.26 : QTL:214407 . Chr.28 : QTL:214370 , QTL:214456 .
QTL/association Reported by chromosomes:
Chr.Z (16) ,
Chr.1 (6) ,
Chr.2 (14) ,
Chr.3 (14) ,
Chr.4 (4) ,
Chr.5 (10) ,
Chr.6 (5) ,
Chr.7 (4) ,
Chr.8 (3) ,
Chr.9 (26) ,
Chr.10 (13) ,
Chr.11 (7) ,
Chr.12 (10) ,
Chr.13 (3) ,
Chr.14 (1) ,
Chr.15 (2) ,
Chr.17 (5) ,
Chr.18 (3) ,
Chr.19 (11) ,
Chr.20 (10) ,
Chr.21 (6) ,
Chr.22 (2) ,
Chr.23 (4) ,
Chr.24 (7) ,
Chr.26 (9) ,
Chr.27 (3) ,
Chr.28 (6) .
Number of gene-based eQTL/associations:
Cite this Dataset :
Animal QTLdb: Dataset from Romé H, Varenne A, Hérault F, Chapuis H, Alleno C, Dehais P, Vignal A, Burlot T, Le Roy P (2016). GWAS analyses reveal QTL in egg layers that differ in response to diet differences. Genetics, Selection, Evolution : GSE, 47: 83;
Curated into QTLdb on 2020-11-09. Universal link to this data set:
https://www.animalgenome.org/QTLdb/supp/?t=NsMg0P5NoA
OR
Romé H, Varenne A, Hérault F, Chapuis H, Alleno C, Dehais P, Vignal A, Burlot T, Le Roy P (2016). GWAS analyses reveal QTL in egg layers that differ in response to diet differences. Genetics, Selection, Evolution : GSE, 47: 83; DOI: https://dx.doi.org/10.1186/s12711-015-0160-2
