Cattle QTL Database

Release 55
(Apr 24, 2025)

Curator: Cari Park
Curated: 2016-08-03
Updated: 2024-04-23

Publication # 27245577 Details

Authors:	Zhou Y, Utsunomiya YT, Xu L, Hay el HA, Bickhart DM, Alexandre PA, Rosen BD, Schroeder SG, Carvalheiro R, de Rezende Neves HH, Sonstegard TS, Van Tassell CP, Ferraz JB, Fukumasu H, Garcia JF, Liu GE (Contact: george.liu@ars.usda.gov)
Affiliation:	Animal Genomics and Improvement Laboratory, BARC, USDA-ARS, Room 111, BARC-East, Beltsville, Maryland, 20705, USA
Title:	Genome-wide CNV analysis reveals variants associated with growth traits in Bos indicus
Journal:	BMC Genomics, 17(1): 419 (2016)	DOI: 10.1186/s12864-016-2461-4
Links:	PubMed \| Abstract \|	( Related study: none )
Click on each trait to browse further along the related trait ontology tree Click on each chromosome number to find the detailed QTL information on that chromosome There are 1 QTL/association on this publication are currently "Obsolete" by the data owner or curator. Please write to Bioinfo-Team@animalgenome.org with the URL address of this page for assistance (for example, if you are a reviewer of a manuscript citing this address as data deposit point). Number of QTL/association reported by traits: QTL for Muscularity reported for chromosome(s): Chr.1: Asso:106230, Asso:106231, Asso:106247, Asso:106248. Chr.2: Asso:106254, Asso:106255. Chr.3: Asso:106256, Asso:106257. Chr.5: Asso:106234, Asso:106235. Chr.7: Asso:106261. Chr.17: Asso:106244, Asso:106245. Chr.19: Asso:106252, Asso:106253. Chr.24: Asso:106260. Chr.25: Asso:106263. QTL for Average daily gain reported for chromosome(s): Chr.1: Asso:106246. Chr.5: Asso:106232. Chr.17: Asso:106236, Asso:106241. Chr.18: Asso:106258. Chr.19: Asso:106249, Asso:106259. QTL for Conformation score reported for chromosome(s): Chr.3: Asso:106262. Chr.5: Asso:106233. Chr.17: Asso:106238, Asso:106239, Asso:106240, Asso:106242, Asso:106243. Chr.19: Asso:106250, Asso:106251. QTL for Finishing precocity reported for chromosome(s): Chr.1: QTL:106397, QTL:106398, QTL:106404, QTL:106405. Chr.2: QTL:106408, QTL:106409. Chr.3: QTL:106410, QTL:106411. Chr.5: QTL:106400, QTL:106401. Chr.17: QTL:106402, QTL:106403. Chr.19: QTL:106406, QTL:106407. Chr.22: QTL:106399. QTL/association Reported by chromosomes: Chr.1 (9), Chr.2 (4), Chr.3 (5), Chr.5 (6), Chr.7 (1), Chr.17 (11), Chr.18 (1), Chr.19 (8), Chr.22 (1), Chr.24 (1), Chr.25 (1). Number of gene-based eQTL/associations: None

Cite this Dataset:

Animal QTLdb: Dataset from Zhou Y, Utsunomiya YT, Xu L, Hay el HA, Bickhart DM, Alexandre PA, Rosen BD, Schroeder SG, Carvalheiro R, de Rezende Neves HH, Sonstegard TS, Van Tassell CP, Ferraz JB, Fukumasu H, Garcia JF, Liu GE (2016). Genome-wide CNV analysis reveals variants associated with growth traits in Bos indicus. BMC genomics, 17(1): 419; Curated into QTLdb on 2016-08-03. Universal link to this data set: https://www.animalgenome.org/QTLdb/supp/?t=LpPn4Y3AgS

Zhou Y, Utsunomiya YT, Xu L, Hay el HA, Bickhart DM, Alexandre PA, Rosen BD, Schroeder SG, Carvalheiro R, de Rezende Neves HH, Sonstegard TS, Van Tassell CP, Ferraz JB, Fukumasu H, Garcia JF, Liu GE (2016). Genome-wide CNV analysis reveals variants associated with growth traits in Bos indicus. BMC genomics, 17(1): 419; DOI: https://dx.doi.org/10.1186/s12864-016-2461-4

Publication # 27245577 Details

Number of QTL/association reported by traits:

QTL/association Reported by chromosomes:

Number of gene-based eQTL/associations: