Pig QTL Database

Release 56
(Apr 24, 2025)

Curators: Cari Park /
Curated: 2025-03-18
Updated:

Publication # 38198533 Details

Authors:	Boshove A, Derks MFL, Sevillano CA, Lopes MS, van Son M, Knol EF, Dibbits B, Harlizius B (Contact: anne.boshove@topigsnorsvin.com)
Affiliation:	Topigs Norsvin Research Center, 's-Hertogenbosch, the Netherlands
Title:	Large scale sequence-based screen for recessive variants allows for identification and monitoring of rare deleterious variants in pigs
Journal:	PLoS Genetics, 20(1): e1011034 (2024)	DOI: 10.1371/journal.pgen.1011034
Links:	PubMed \| Abstract \|	( Related study: none )
Click on each trait to browse further along the related trait ontology tree Click on each chromosome number to find the detailed QTL information on that chromosome Number of QTL/association reported by traits: QTL for Average daily gain reported for chromosome(s): Chr.1: Asso:315072, Asso:315073, Asso:315074, Asso:315075, Asso:315076, Asso:315077, Asso:315087, Asso:315088, Asso:315089. Chr.2: Asso:315078, Asso:315079, Asso:315080. Chr.5: Asso:315081, Asso:315090. Chr.6: Asso:315082, Asso:315091. Chr.7: Asso:315092, Asso:315093. Chr.10: Asso:315083, Asso:315084. Chr.12: Asso:315085. Chr.13: Asso:315086, Asso:315094. Chr.15: Asso:315095. QTL for Subcutaneous fat thickness reported for chromosome(s): Chr.1: Asso:315096, Asso:315097, Asso:315109, Asso:315110, Asso:315111. Chr.2: Asso:315098, Asso:315099, Asso:315100. Chr.5: Asso:315101, Asso:315112. Chr.6: Asso:315102, Asso:315103. Chr.7: Asso:315104. Chr.10: Asso:315105, Asso:315113. Chr.11: Asso:315114. Chr.12: Asso:315106. Chr.15: Asso:315115, Asso:315116. Chr.16: Asso:315107, Asso:315117. Chr.18: Asso:315108, Asso:315118. QTL/association Reported by chromosomes: Chr.1 (14), Chr.2 (6), Chr.5 (4), Chr.6 (4), Chr.7 (3), Chr.10 (4), Chr.11 (1), Chr.12 (2), Chr.13 (2), Chr.15 (3), Chr.16 (2), Chr.18 (2). Number of gene-based eQTL/associations: None

Cite this Dataset:

Animal QTLdb: Dataset from Boshove A, Derks MFL, Sevillano CA, Lopes MS, van Son M, Knol EF, Dibbits B, Harlizius B (2024). Large scale sequence-based screen for recessive variants allows for identification and monitoring of rare deleterious variants in pigs. PLoS genetics, 20(1): e1011034; Curated into QTLdb on 2025-03-18. Universal link to this data set: https://www.animalgenome.org/QTLdb/supp/?t=CyVz7E6DmB

Boshove A, Derks MFL, Sevillano CA, Lopes MS, van Son M, Knol EF, Dibbits B, Harlizius B (2024). Large scale sequence-based screen for recessive variants allows for identification and monitoring of rare deleterious variants in pigs. PLoS genetics, 20(1): e1011034; DOI: https://dx.doi.org/10.1371/journal.pgen.1011034

Publication # 38198533 Details

Number of QTL/association reported by traits:

QTL/association Reported by chromosomes:

Number of gene-based eQTL/associations: